The present work is an extension of a previous study of the nucleonnucleon interaction based on the chromo-dielectric soliton model. The former approach was static, leading to an adiabatic potential. Here we perform a dynamical study in the framework of the Generator Coordinate Method. In practice, we derive an approximate Hill-Wheeler differential equation and ob-tain a local nucleon-nucleon potential as a function of a mean generator coordinate. This coordinate is related to an effective separation distance between the two nucleons by a Fujiwara transformation. This latter relationship is especially useful in studying the quark substructure of light nuclei. We investigate the explicit contribution of the one-gluon exchange part of the six-quarkHamiltonian to the nucleon-nucleon potential, and we find that the dynamics are responsible for a significant part of the short-range N-N repulsion.PACS number(s): 24.85.+p, 21.30.+y, 13.75.Cs, 12.39.Ba Typeset using REVT E X