Nitric oxide (NO) is shown to overcome the cyanide inhibition of cytochrome c oxidase in the presence of excess ferrocytochrome c and oxygen. Addition of NO to the partially reduced cyanide-inhibited form of the bovine enzyme is shown by electron paramagnetic resonance spectroscopy to result in substitution of cyanide at ferriheme a 3 by NO with reduction of the heme. The resulting nitrosylferroheme a 3 is a 5-coordinate structure, the proximal bond to histidine having been broken. NO does not simply act as a reversibly bound competitive inhibitor but is an auxiliary substrate consumed in a catalytic cycle along with ferrocytochrome c and oxygen. The implications of this observation with regard to estimates of steady-state NO levels in vivo is discussed. Given the multiple sources of NO available to mitochondria, the present results appear to explain in part some of the curious biomedical observations reported by other laboratories; for example, the kidneys of cyanide poisoning victims surprisingly exhibit no significant irreversible damage, and lethal doses of potassium cyanide are able to inhibit cytochrome c oxidase activity by only ϳ50% in brain mitochondria.The reactions of cytochrome c oxidase with nitric oxide (NO) have recently been the subject of renewed scrutiny (1-6) because of their emerging physiological significance (7-12). Furthermore, the discovery and functional characterization of a mitochondrial NO synthase (9, 13, 14) raises a series of questions regarding the possible regulation of the electron transport chain by NO. Several catalytic cycles have been proposed (4,6,(15)(16)(17) to explain the consumption of NO by the oxidase while turning over in the presence of cytochrome c and oxygen. Some of these cycles implicitly treat the NO as an auxiliary substrate rather than simply a competitive inhibitor, to account for the observed production of nitrite in addition to the slowing of electron transfer rate. In some cases an oxyferryl intermediate of heme a 3 is proposed and interaction of incoming NO with Cu B assumed (15, 16), whereas other schemes invoke the formation of a nitrosylheme a 3 intermediate (4,6,17). Consequently, clarification of which (if either) of the two centers of the binuclear pair, heme a 3 or Cu B , preferentially reacts with NO to form detectable derivatives should be of some value in assessing the relative likelihood of one proposed scheme over another as conditions are varied.When metalloenzymes have multiple binding sites for small molecular substrates and inhibitors, especially within the same active site domain, studies with mixed-ligand adducts can often reveal useful details of the coordination chemistry. Here we report the results of an investigation into the preferred site of NO reaction with bovine heart cytochrome c oxidase in the presence of the potent competitive inhibitor, cyanide, both under conditions of turnover and where the enzyme has been allowed to equilibrate in the presence of NO, cyanide, and reducing equivalents. The findings we report appear to be ...