The mechanisms of ion formation in matrix-assisted laser desorption/ionization mass spectrometry are still largely unknown. Ions may exist as pre-formed species in the solid state, or may form by ion-molecule reactions initiated by the laser shot, or, most probably, they may originate from a combination of both processes. The contribution of pre-formed ions was approached from the standpoint of coordination chemistry and studied in different transition metal ion/matrix systems as well as in the copper/polystyrene system. The solution, the solid and the gas phases were investigated by means of infrared, visible and proton nuclear magnetic resonance spectroscopy, as well as by matrix-assisted laser desorption/ionization (MALDI) mass spectrometry. It was found that the contribution of pre-formed ions can be predicted on the basis of condensed phase thermodynamics. MALDI mass spectra qualitatively reflect the amount of pre-formed complexes in the solid target. © 1997 by John Wiley & Sons, Ltd. Received 25 May 1997; Revised 28 July 1997; Accepted 28 July 1997 Rapid. Commun. Mass Spectrom. 11, 1483-1492 Since its introduction in 1988, matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS) has developed into a powerful tool for the analysis of biomolecules and synthetic polymers.1-8 However, the mechanisms of ion formation are still not fully understood. Two main possibilities exist: ions may either exist 'pre-formed' in the solid state and simply be liberated upon laser irradiation, or they may form by ion-molecule reactions initiated by the laser pulse. Until now, studies have focused on post-desorption reactions.9-13 Only a few experimental studies on preformed ions have been performed. Liao and Allison 14 found that, under the conditions of their experiment, peptides which had been derivatized with a charged triphenylphosphonium group yielded a signal. This was not the case for underivatized peptides. The authors attributed this to the fact that derivatized peptides are already ionized in the solid and only have to be desorbed, which decreases the laser energy requirement. Nelson and Hutchens 15 performed cationization experiments with a histidine-rich peptide and reported results suggesting pre-formed ions. After washing a sample containing matrix, peptide and metal salt, copper-peptide adducts were still observed in the MALDI spectra, whereas sodium and potassium adducts disappeared. This observation was attributed to the fact that the copper adducts are pre-formed in solution, but not the sodium and potassium adducts.For the cationization of other analytes such as apolar polymers which are preferentially cationized with transition metal ions in MALDI, it is widely assumed that cation attachment takes place in the gas phase. [16][17][18] However, little experimental evidence exists to support this statement.The purpose of this study was to investigate the contribution of pre-formed ions to the ion signal observed in MALDI. We were especially interested in predicting this contribution based on p...