A new procedure for the partial purification of Mg 2q -dependent, N-ethylmaleimide-sensitive phosphatidate phosphohydrolase (Mg 2q -PAP; EC 3.1.3.4) from rat liver cytosol is described, using protein precipitation with MgCl 2 , gel filtration on Sephacryl S-400, chromatography on DEAE-cellulose and affinity chromatography on calmodulin-agarose. From the parallel change in staining intensity and in the level of the specific activity of enzyme fractions, a relationship between a 90-kDa SDS gel band, identified as the b-isoform of the 90-kDa heat shock protein, and Mg 2q -PAP could be detected.Keywords: 90-kDa heat shock protein b-isoform; purification; rat liver cytosol.Among the enzymes cooperating in hepatic triacylglycerol and phospholipid synthesis (Coleman et al., 2000), Mg 2q -dependent, N-ethylmaleimide-sensitive phosphatidate phosphohydrolase (Mg 2q -PAP; EC 3.1.3.4) is perhaps the least known. This is in striking contrast to the immense pathophysiological impact of disturbed lipid production and points to the great difficulties impeding the purification of this enzyme. Two decades after the report on the hitherto most successful partial purification from rat liver cytosol (Butterwith et al., 1984), we describe our efforts to gain more insight into the nature of this enzyme protein, resulting in new purification steps that lead to the detection of a possible relation between Mg 2q -stimulated phosphatidate hydrolysis and the 90-kDa heat shock protein b-isoform (HSP90b). The purification of Mg 2q -PAP is hampered by the fact that the enzyme is firmly associated with a number of proteins. Moreover, after initial purification, the enzyme activity becomes rather labile, with losses amounting up to 50% within 24 h. The step first reported (Hosaka et al., 1975) to yield an appreciable increase in the specific activity of Mg -PAP activity could be extracted by KSCN treatment. Under the Tris, pH 7.2 conditions described, some 90% of the contaminating proteins remained in the pellet. These data, as well as our respective SDS gel patterns (not shown), warrant the notion that the use of magnesium chloride is superior to ammonium sulfate (Hosaka et al., 1975) in enzyme preparation. The basis of the second effective purification step is filtration of the KSCN extract on Sephacryl S-400 in the presence of Nonidet P-40. This was also performed after pretreatment of the KSCN extract with dimethylmaleic anhydride (DMMA), because DMMA favours the dissociation of protein complexes in a reversible, pH-regulated manner (Wieland et al., 1979). In our functional tests, DMMA led to ca. 90% loss of Mg 2q -PAP activity, which could be recovered by acidification by some 50%, and thus we were interested in the behaviour of the freshly inactivated KSCN extract on Sephacryl S-400. DMMA apparently caused dissociation of Mg 2q -PAP from associated proteins, as only one activity peak (elution volume corresponding to approx. 550 kDa) was observed, whereas in the control (acetone alone) sample an additional peak was found at approxi...