Austral summer surface and subsurface sampling of the water column was conducted at five drill sites (Sites 739-743) and included 14 stations in Prydz Bay, East Antarctica, from 66°S to 68°S approximately along 75°E, from 18 January through 3 February 1988. The samples were taken from seven depths at each station, between the surface and 200 m, to gain quantitative information on the composition, abundance, and distribution of the diatoms in water column assemblages in Prydz Bay.Over 40 , in the order of average abundance, respectively, and also as a time series in the short growing season.Two different distributional patterns were observed. Small pennate diatom species (< 20 µm), Nitzschia cylindrus, Nitzschia closterium, and Nitzschia curta, dominated at all drill sites and were distributed ubiquitously along the transect of sampling sites, while larger-celled (>20 µm) diatom species, Chaetoceros dichaeta, Chaetoceros neglectus, and Corethron criophilum, were concentrated in the inner part of Prydz Bay. The smaller-celled diatom species influenced the total diatom cell density and showed similar patterns of distribution to the totals, whereas profiles of the largercelled diatom species showed similar patterns to the chlorophyll a concentration. The larger-celled diatom species with their large cell volumes may affect the chlorophyll a distribution pattern and represent a significant biomass source inshore.Cluster analysis revealed different relationships depending on which variables were used for the analysis. When only larger-celled diatom species were included in the analysis, stations were separated clearly into those from the inner part of Prydz Bay (Sites 740 and 741) and those from the outer part of Prydz Bay (Sites 739, 742, and 743). But when only smaller-celled diatom species were used for analysis, the stations from inner and outer Prydz Bay intermingled and were not separated clearly.Diatom cell maxima were located slightly above the seasonal thermocline while chlorophyll a maxima were located in the thermocline, slightly below the diatom cell maxima. Vertical diatom distributions mirrored the physical structure in the bay. Principal component analysis (PCA) using diatom cell density (cells/L) and chlorophyll a concentration (µg /L) from discrete water samples (seven depths) as variables revealed that the samples from the Prydz Bay drill sites not only separated based on depth (above thermocline vs. below thermocline), but they also separated based on station.