Abstract:Despite the tremendous usage of HMBC to establish long-range (1) H-(13) C and (1) H-(15) N heteronuclear correlations, an inherent drawback of the experiment is the indeterminate nature of the (n) JXH correlations afforded by the experiment. A priori there is no reliable way of determining whether a given (n) JCH correlation is, for example, via two-, three-, or sometimes even four-bonds. This limitation of the HMBC experiment spurred the development of the ADEQUATE family of NMR experiments that rely on, in t… Show more
“…In this report, we will show examples of commercially available pyrimidine analogs with different electronegative substituents to illustrate that relatively large 3 J CC correlations from position 2 to position 5 can be observed in 1,1‐ADEQUATE spectra with considerable intensity. The present study further expands our understanding of potential untoward n J CC correlations that may be observed in 1,1‐ADEQUATE spectra …”
Section: Introductionsupporting
confidence: 59%
“…The intensities of correlations observed in the ADEQUATE spectra acquired for small molecules are primarily governed by the congruence of the actual carbon–carbon coupling constant and the delay optimization for the 1 J CC transfer, which is typically in the range of 40 to 60 Hz. As previously reported, large multiple‐bond correlations can give rise to observable correlations in 1,1‐ or 1,1‐HD‐ADEQUATE spectra . For aromatic compounds, such as pyrimidine derivatives, a good optimization delay for the 1 J CC transfer step would be 60 Hz due to the aromatic nature of the molecule.…”
Section: Resultsmentioning
confidence: 77%
“…Even though the small quantity of the alkaloid available precluded the measurement of the coupling constant, the density functional theory (DFT)‐calculated 2 J CC coupling constant was 15.6 Hz. Given the optimization of the 1,1‐HD‐ADEQUATE experiment for 60 Hz, the expected response intensity for the 2 J CC coupling was close to 15%, so it is not surprising that the correlation was observed . In a more recent study of primicin ( 2 ), neither potential 2 J CC correlation in the 1,1‐ADEQUATE spectrum, indicated by the double‐headed red arrow, was observed .…”
Section: Introductionmentioning
confidence: 99%
“…If data acquisition parameters are not carefully considered, observation of these correlations could lead to a potential structural misassignment and thereby to incorrectly reported structures. We have reported, for instance, that large 2 J CC across carbonyls can be seen in 1,1‐ADEQUATE spectra or that large 3 J CC may be observed in pyrazine‐like compounds …”
Section: Introductionmentioning
confidence: 99%
“…The coupling constant was calculated via DFT with a value of 12.8 Hz, and the experimental measurement was 11.3 Hz. The expected response intensity for the 2 J CC coupling is 20% in a 40‐Hz optimized experiment, but due to an additional sensitivity boost from HD, the intensity was actually comparable with the conventional direct carbon–carbon correlations . In a conventional 40‐Hz optimized 1,1‐ADEQUATE spectrum, the 2 J CC correlation intensity was comparable with some of the more intense noise spikes when an extracted trace was examined.…”
Recently, it has been reported that large J correlations can sometimes be observed in 1,1-ADEQUATE spectra with significant intensity, which opens the possibility of structural misassignment. In this work, we have focused on pyrimidine-based compounds, which exhibit multiple bond correlations in the 1,1-ADEQUATE experiment as a consequence of J coupling constants greater than 10 Hz. Results are supported by both the experimental measurement of J coupling constants in question using J-modulated-ADEQUATE and density functional theory calculations.
“…In this report, we will show examples of commercially available pyrimidine analogs with different electronegative substituents to illustrate that relatively large 3 J CC correlations from position 2 to position 5 can be observed in 1,1‐ADEQUATE spectra with considerable intensity. The present study further expands our understanding of potential untoward n J CC correlations that may be observed in 1,1‐ADEQUATE spectra …”
Section: Introductionsupporting
confidence: 59%
“…The intensities of correlations observed in the ADEQUATE spectra acquired for small molecules are primarily governed by the congruence of the actual carbon–carbon coupling constant and the delay optimization for the 1 J CC transfer, which is typically in the range of 40 to 60 Hz. As previously reported, large multiple‐bond correlations can give rise to observable correlations in 1,1‐ or 1,1‐HD‐ADEQUATE spectra . For aromatic compounds, such as pyrimidine derivatives, a good optimization delay for the 1 J CC transfer step would be 60 Hz due to the aromatic nature of the molecule.…”
Section: Resultsmentioning
confidence: 77%
“…Even though the small quantity of the alkaloid available precluded the measurement of the coupling constant, the density functional theory (DFT)‐calculated 2 J CC coupling constant was 15.6 Hz. Given the optimization of the 1,1‐HD‐ADEQUATE experiment for 60 Hz, the expected response intensity for the 2 J CC coupling was close to 15%, so it is not surprising that the correlation was observed . In a more recent study of primicin ( 2 ), neither potential 2 J CC correlation in the 1,1‐ADEQUATE spectrum, indicated by the double‐headed red arrow, was observed .…”
Section: Introductionmentioning
confidence: 99%
“…If data acquisition parameters are not carefully considered, observation of these correlations could lead to a potential structural misassignment and thereby to incorrectly reported structures. We have reported, for instance, that large 2 J CC across carbonyls can be seen in 1,1‐ADEQUATE spectra or that large 3 J CC may be observed in pyrazine‐like compounds …”
Section: Introductionmentioning
confidence: 99%
“…The coupling constant was calculated via DFT with a value of 12.8 Hz, and the experimental measurement was 11.3 Hz. The expected response intensity for the 2 J CC coupling is 20% in a 40‐Hz optimized experiment, but due to an additional sensitivity boost from HD, the intensity was actually comparable with the conventional direct carbon–carbon correlations . In a conventional 40‐Hz optimized 1,1‐ADEQUATE spectrum, the 2 J CC correlation intensity was comparable with some of the more intense noise spikes when an extracted trace was examined.…”
Recently, it has been reported that large J correlations can sometimes be observed in 1,1-ADEQUATE spectra with significant intensity, which opens the possibility of structural misassignment. In this work, we have focused on pyrimidine-based compounds, which exhibit multiple bond correlations in the 1,1-ADEQUATE experiment as a consequence of J coupling constants greater than 10 Hz. Results are supported by both the experimental measurement of J coupling constants in question using J-modulated-ADEQUATE and density functional theory calculations.
In the approximately 70 years since the first reports of experiments that led to what is now known as nuclear magnetic resonance or NMR spectroscopy, the technique has become the cornerstone of molecular structure characterization. From the isolation of strychnine to the confirmation of its complex structure in a total synthesis reported by Woodward consumed a century and a half. In contrast, using a modern 600 MHz NMR instrument equipped with a 1.7 mm MicroCryoProbe™, that task can now be accomplished in 24 hours, including the acquisition of
15
N chemical shift information on a few milligrams of sample. Such is the magnitude of the advances that have been made in the discipline. This article is not intended to make NMR spectroscopists out of a practicing medicinal chemistry; rather, the article is intended to acquaint the reader with recent advances in NMR techniques that are making it possible to successfully and unequivocally characterize ever increasingly more complex structures being synthesized in the laboratory as potential drug candidates or isolated from nature. Our goal was to augment the NMR knowledge of the medicinal chemist, better equipping him or her to more effectively interact with the NMR spectroscopy staff at the chemist's facility. The article begins with a discussion of new experimental methods that allow the acquisition of broadband decoupled
1
H NMR spectra that resemble an
1
H‐decoupled
13
C spectrum, with every proton resonance reduced to a singlet. Pure‐shift heteronuclear shift correlation methods are described next, followed by new long‐range heteronuclear chemical shift correlation experiments and then hyphenated techniques to identify components of complex, overlapped proton homonuclear spin systems. Techniques are also described for the unequivocal identification of vicinal neighbor carbon resonances that can be invaluable when dealing with complex impurities or degradation products. Covariance NMR data processing methods that allow 2D NMR experiments to be treated as large numerical matrices that can be manipulated using matrix algebraic operations are briefly discussed. Finally, anisotropic NMR methods are considered, which afford investigators the means of orthogonally verifying chemical structure constitution and configuration without investigator bias that often can lead to erroneously assigned structures. The latter eventuality, of course, can slow development timelines or could potentially have devastating patent protection consequences and regulatory implications.
The utility of the HMBC experiment for structure elucidation is unquestionable, but the nature of the coupling pathways leading to correlations in an HMBC experiment creates the potential for misinterpretation. This misinterpretation potential is intimately linked to the size of the long‐range heteronuclear couplings involved, and may become troublesome in those cases of a particularly strong 2JCH correlation that might be mistaken for a 3JCH correlation or a 4JCH correlation of appreciable strength that could be mistaken for a weaker 3JCH correlation. To address these potential avenues of confusion, work from several laboratories has been focused on the development of what might be considered “coupling pathway edited” long‐range heteronuclear correlation experiments that are derived from or related to the HMBC experiment. The first example of an effort to address the problems associated with correlation path length was seen in the heteronucleus‐detected XCORFE experiment described by Reynolds and co‐workers that predated the development of the HMBC experiment. Proton‐detected analogs of the HMBC experiment intended to differentiate 2JCH correlations from nJCH correlations where n = 3, 4, include the 2J,3J‐HMBC, HMBC‐RELAY, H2BC, edited‐HMBC, and HAT H2BC experiments. The principles underlying the critical components of each of these experiments are discussed and experimental verification of the results that can be obtained using model compounds are shown. This contribution concludes with a brief discussion of the 1,1‐ADEQUATE experiments that provide an alternative means of identifying adjacent protonated and non‐protonated carbon correlations by exploiting 1JCC correlations at natural abundance.
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