Enzymatic repair of the 0-alkylpyrimiidines (O2_ and 04-alkylthymine, 02-alkylcytosine) and alkyl phosphotriesters has been studied in Escherichia conl, and the two proteins involved, a glycosylase (DNA-3-methyladenine glycosylase) and a methyltransferase (DNA-O'-methylguanine:protein-L-cysteine S-methyltransferase, EC 2.1.1.63), have been well characterized. In mammals or mammalian cells treated with carcinogenic alkylating agents, loss of these derivatives has been demonstrated repeatedly. Nevertheless, mammalian repair proteins that are analogous to those from E. coli do not detectably act on these alkyl derivatives. A variety of techniques has been used by many investigators in the United States and Europe, who conclude here that the mode of 0-alkylpyrimidine and alkyl phosphotriester repair in mammalian cells differs from that in E. coil. New approaches and methods are needed to characterize these processes at the biochemical and molecular level.Many methylating and ethylating agents are potent carcinogens when administered to animals. In particular, N-nitroso compounds, such as direct acting methylnitrosourea (MeNU) and ethylnitrosourea (EtNU) and the metabolically activated analogous compounds dimethylnitrosamine and diethylnitrosamine, produce tumors in rats, mice, hamsters, etc. (for reviews, see refs. 1 by Montesano and Bartsch and 2 by Preussman and Stewart). The initial amount of alkylpurines in DNA and their persistence, or half-life (ti,2), in vivo has been measured repeatedly. For 06-methylguanine (m6G) or 06-ethylguanine (e6G), the half-life has been found to be a function of dose, species, and tissue and cell type; removal of the alkylpurines has been correlated with the DNA-06-methylguanine:protein-L-cysteine S-methyltransferase (m6-MT; EC 2.1.1.63) activity present (for reviews, see refs. 3 by Pegg and 4 by Yarosh). This enzyme has been isolated from a variety of mammalian cells and acts on m6G in a manner similar to the Escherichia coli m6-MT. That is, the enzyme molecule is inactivated by the transfer of the nucleoside alkyl group to a cysteine sulfhydryl group in the enzyme, and there is apparently no regeneration of the inactivated molecule (for review, see ref. 5 by Lindahl).In common with E. coli, mammalian cells also contain a second activity, DNA-3-methyladenine glycosylase, which can remove N-3 and N-7 alkylpurines from DNA by catalyzing cleavage of the sugar-base bond (6, 7). Both the m6-MT and the glycosylase are more efficient in acting on methyl derivatives than on ethyl derivatives (8-10). When 06-modified propyl-, butyl-, isopropyl-, or isobutyldeoxyguanosines are the substrates for m6-MT, the rate of dealkylation decreases with the size of the alkyl group, and the branched chain adducts are poorly repaired (11).Most, if not all, of these alkylpurine activities are the same as those found for the analogous enzymes from E. doli or Micrococcus luteus. However, the specificity of the bacterial repair enzymes differs greatly from repair enlymes isolated from mammalian source...