The human gut contains a microbial community composed of tens of trillions of organisms that normally assemble during the first 2-3 y of postnatal life. We propose that brain development needs to be viewed in the context of the developmental biology of this "microbial organ" and its capacity to metabolize the various diets we consume. We hypothesize that the persistent cognitive abnormalities seen in children with undernutrition are related in part to their persistent gut microbiota immaturity and that specific regions of the brain that normally exhibit persistent juvenile (neotenous) patterns of gene expression, including those critically involved in various higher cognitive functions such as the brain's default mode network, may be particularly vulnerable to the effects of microbiota immaturity in undernourished children. Furthermore, we postulate that understanding the interrelationships between microbiota and brain metabolism in childhood undernutrition could provide insights about responses to injury seen in adults. We discuss approaches that can be used to test these hypotheses, their ramifications for optimizing nutritional recommendations that promote healthy brain development and function, and the potential societal implications of this area of investigation.In 2001, Raichle et al. published a paper in PNAS describing the default mode network (DMN) (1). This network consists of discrete, bilateral, and symmetrical areas in parietal, prefrontal, and temporal cortices of the human, nonhuman primate, feline, and rodent brain (2). The DMN consistently decreases its activity during the performance of novel, attention-demanding, non-self-referential tasks compared with quiet repose and more automatic activities. Another unique feature of the DMN is that it exhibits an overall high metabolic rate. The discovery of the DMN with its unique constellation of features has reignited a longstanding interest in the significance of the brain's ongoing or intrinsic activity (currently dubbed the brain's "resting state") (3), which accounts for the vast majority of its enormous energy cost. We believe it is timely to provide a Perspective that challenges us to consider how this cost is being met and how new knowledge gleaned from studying the development of our gut microbial communities can be leveraged to build healthy brains and minds through better nutrition.