To study the effect of a bird striking engine fan on the rotor system, a low-pressure rotor system dynamic model based on a real aero-engine structure was established. Dynamic equations were derived considering the case of the bird strike force which transferred to the rotor system. The bird strike force was obtained from the bird strike process simulation in LS-DYNA, where a smoothed particle hydrodynamics (SPH) mallard model was constructed using a computed tomography (CT) scanner, and finite element method (FEM) was used to simulate the bird strike on an actual fan model. The dynamic equations were solved using the Newmark-β method. The effect of rotational speeds on the rotor system dynamics after bird strike was investigated and discussed. Results show that the maximum bird impact force can reach 104 kN at 3772 r/min. Impact time is only 0.06 s, but the bird strike on fan blades lead to a transient shock on the rotor system. Under the action of transient shocks, the rotor system displacement in the horizontal and vertical directions increase sharply, and the closer the mass point is to the fan, the more it is affected; the vibration amplitude at the fan will increase 15 times within 0.1 s of the bird strike and will gradually decrease with the effect of damping. The dynamics of the rotor system changes from a stable single periodic motion to a complex irregular quasi-periodic motion after a bird strike, and the strike force excites the first-order vibrational mode of the rotor system. This phenomenon occurs at all speeds when bird strikes occur. Bird strikes will cause resonance in the rotor system, which may cause damage to the engine. It was also seen that the bird strike force, and hence the effects on the rotor system, increases as the engine rotational speed increases; the peak force is larger and the number of peaks has increased. The impact force at 3772 r/min is 99.5 kN higher than at 836 r/min, and three additional peaks emerged. This effect is more reflected in the amplitude, and the overall vibration characteristics do not change. Combining the bird strike with the rotor dynamics calculation, the dynamic response of the aero-engine rotor system to bird strike is studied at different flight stages, which is of guiding significance for power evaluation of aero engines after bird strike.