The degradation of nuclear pore components and disruption of nucleocytoplasmic trafficking during rhinovirus infection have been attributed to viral 2A protease. Here we show for the first time that rhinovirus 3C protease may also have a role. Specifically, we show that 3C and its precursor, 3CD, can target green fluorescent protein to the nucleus of living cells, leading to degradation of nuclear pore components, and that incubation with recombinant 3C disrupts active and passive nucleocytoplasmic transport in a semi-intact cell nuclear transport system dependent on 3C protease activity. 3C may thus contribute to host cell shutoff in infected cells by localizing in the nucleus and facilitating nuclear pore breakdown.Human rhinoviruses (HRVs) are positive-strand RNA viruses belonging to the Picornaviridae family, which includes poliovirus. Although picornavirus replication is completed within the cytoplasm, many nuclear factors have been implicated in the life cycle of both HRVs and polioviruses. Gustin and Sarnow (11) previously showed mislocalization of cellular proteins late in infection in HRV-infected cells that was attributed to inhibited nuclear import due to degradation of several nucleoporins (Nup153 and Nup62) that are critical components of the nuclear pore, the only avenue for transport into and out of the nucleus. Degradation of Nup153 and Nup62 has also been observed in poliovirus infection (10). Recent work (17) indicates that another nucleoporin, Nup98, is also degraded in poliovirus-infected cells and that this precedes cleavage of Nup153 and Nup62. Importantly, results from in vitro cleavage experiments using HRV 2A protease were used to implicate picornavirus 2A protease as the mediator of cleavage of Nup98 (17), but 2A protease cleavage of Nup98 alone was not found to be sufficient to induce alterations in nuclear pore permeability. Importantly, a role in this context was not considered for the other major protease of HRV, 3C. Both 3C protease and its precursor form, 3CD, have been observed in the nucleus of cells infected with HRV or transfected to express 3CD (1), meaning that 3C is an ideal candidate to mediate effects on host cell nuclear transport.Here we present evidence for the first time that HRV 3C protease has intrinsic nuclear targeting potential, and, dependent on its protease activity, is able to disrupt both active and passive nucleocytoplasmic transport. The results suggest that 3C protease, like 2A (17), is likely to contribute to the disruption of host cell nuclear transport, a key factor in host cell shutdown.To test 3C's nuclear targeting ability, the coding sequences for HRV16 3CD and 3C were both cloned into the pEPI-DESTC Gateway vector (9) and expressed as C-terminal green fluorescent protein (GFP) fusion derivatives in transfected Vero cells with GFP alone (pEPI-GFP) as a control. Localization of GFP fluorescence was monitored by live-cell confocal laser scanning microscopy (CLSM) at 18 h posttransfection, and the ImageJ1.62 shareware was used to analyze the digital im...