nQuack: An R package for predicting ploidal level from sequence data using site-based heterozygosity
Michelle L. Gaynor,
Jacob B. Landis,
Timothy K. O’Connor
et al.
Abstract:PremiseTraditional methods of ploidal level estimation are tedious; leveraging sequence data for cytotype estimation is an ideal alternative. Multiple statistical approaches to leverage DNA sequence data for ploidy prediction based on site-based heterozygosity have been developed. However, these approaches may require high-coverage sequence data, use improper probability distributions, or have additional statistical shortcomings that limit inference abilities. We introduce nQuack, an open-source R package, tha… Show more
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