We demonstrate that the structure of carbocyanine dyes, which are commonly used to label small peptides for molecular imaging, and not the bound peptide, controls the rate of extravasation from blood vessels to tissue. By examining several near-infrared (NIR) carbocyanine fluorophores, we demonstrate a quantitative correlation between the binding of a dye to albumin, a model plasma protein, and the rate of extravasation of the probe into tissue. Binding of the dyes was measured by fluorescence quenching of the tryptophans in albumin and was found to be inversely proportional to the rate of extravasation. The rate of extravasation, determined by kurtosis from longitudinal imaging studies using rodent ear models, provided a basis for quantitative measurements. Structure-activity studies aimed at evaluating a representative library of NIR fluorescent cyanine probes showed that hydrophilic dyes with binding constants several orders of magnitude lower than their hydrophobic counterparts have much faster extravasation rate, establishing a foundation for rational probe design. The correlation provides a guideline for dye selection in optical imaging and a method to verify if a certain dye is optimal for a specific molecular imaging application Keywords near-infrared; contrast agent; extravasation; kurtosis; protein bindingThe development of a molecular probe in optical imaging is a complex process that requires substantial and concerted efforts from different disciplines, including chemistry, biology, physics, and engineering. From a chemistry point of view, a typical probe for molecular imaging consists of a targeting moiety, such as peptides, oligosaccharides, small organic molecules and a covalently linked fluorophore. Probes designed for deep tissue and noninvasive optical imaging are different from those for in vitro or cellular studies where desirable features include good fluorescence intensity in the visible range and decent cell