Electronegative LDL [LDL (2)] is an atherogenic subfraction of plasma LDL that has increased apolipoprotein E (apoE) and apoC-III content, high density, and increased susceptibility to aggregation. These characteristics suggest that LDL(2) could bind to proteoglycans (PGs); therefore, our aim was to evaluate its affinity to PGs. Binding of LDL(2) and native LDL [LDL(1)] to human aortic PGs was determined by precipitation of LDL-glycosaminoglycan complexes, LDL incubation in PG-coated microtiter wells, and affinity chromatography on PG column. All methods showed that LDL(2) had higher binding affinity to PGs than did LDL(1). PG capacity to bind LDL(2) was increased approximately 4-fold compared with LDL(1) in precipitation and microtiter assays. Chromatography on PG column showed LDL(2) to consist of two subpopulations, one with higher and one with lower PG binding affinity than LDL(1). Unexpectedly, the lower PG affinity subpopulation had increased apoE and apoC-III content. In contrast, the high PG affinity subpopulation presented phospholipase C (PLC)-like activity and increased aggregation. These results suggest that PLC-like activity could alter LDL lipid composition, thereby promoting particle aggregation and binding to PGs. This propensity of a subpopulation of LDL(2) to bind to PGs could facilitate its retention in the extracellular matrix of arterial intima and contribute to atherosclerosis progression.-Bancells, C., S. Benítez, M. Jauhiainen, J. Ordóñez-Llanos, P. T. Kovanen, S. Villegas, J. L. Sánchez-Quesada, and K. Öörni. High binding affinity of electronegative LDL to human aortic proteoglycans depends on its aggregation level. J. Lipid Res. 2009. 50: 446-455.