Abstract-Familial combined hyperlipidemia (FCH), a common cause of premature coronary artery disease, is genetically complex and poorly understood. Recently, a major locus on chromosome 1q21-23 exhibiting highly significant linkage was identified in Finnish FCH families by use of a parametric analysis. We now report highly significant evidence of linkage (maximum LOD score 3.8, recombination fraction 0) of an important FCH phenotype, elevated apolipoprotein B (apoB) levels, to a distinctly separate locus on chromosome 1p31 in Dutch pedigrees. ApoB is the major protein on very low density and low density lipoproteins, and elevated apoB levels have been used as a surrogate trait for FCH. Additional microsatellite markers in the 1p31 region were genotyped, and evidence of linkage improved (maximum LOD score 4.7) in a multipoint analysis of two markers in the peak region. The leptin receptor gene resides within this locus and is involved in obesity and insulin/glucose homeostasis. However, there was no evidence of an association between leptin receptor and apoB levels, raising the possibility that another gene on this chromosomal region contributes to elevated apoB levels in this Dutch population. This is one of the first loci identified for apoB levels in humans and is the second major locus implicated in the genetic etiology of FCH. Because FCH is not a monogenic disorder, it is also possible that FCH families have multiple or even different alterations in lipoprotein metabolism rather than just a single defect in one of these abnormalities.To date, hypotheses regarding the underlying mode of inheritance of FCH, which was originally thought to be dominant, have been based on linkage and segregation analyses 5-7 and remain to be corroborated by identification of the causative genes. A number of genetic studies have been conducted in various ethnic populations to identify susceptibility loci for FCH. Although several candidate genes have been implicated, these genes appear to have only subtle effects and most probably modify the elevated lipid phenotype rather than represent the primary cause. 4 Two genome scans for FCH in Dutch and Finnish families have also been recently reported. 8,9 These studies identified several loci in each FCH population, but there was no obvious overlap between the loci in the two studies. In particular, evidence for a major FCH locus was observed on chromosome 1q21-23 in the Finnish families. 10 This locus has since also been observed with modest levels of significance in the US, Chinese, and German FCH populations as well 11,12 but was not apparent in the initial analyses of Dutch data. Some explanation for this observation is provided by differences in the genetic background between the Finnish and Dutch populations. However, the use of different analytic methods can also contribute to these findings, because nonparametric affected sibling-pair linkage methods were used in the Dutch genome scan, whereas model-based parametric linkage analysis was used in the Finnish study.In the present...