Abstract:In the study of rooted phylogenetic networks, analyzing the set of rooted phylogenetic trees that are embedded in such a network is a recurring task. From an algorithmic viewpoint, this analysis almost always requires an exhaustive search of a particular multiset S of rooted phylogenetic trees that are embedded in a rooted phylogenetic network N . Since the size of S is exponential in the number of reticulations of N , it is consequently of interest to keep this number as small as possible but without loosing … Show more
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