Non-contiguous segments of the polyoma genome required in cis for DNA replication

Luthman, Holger; Nilsson, Maj-Greth; Magnusson, Göran

doi:10.1016/0022-2836(82)90406-5

Cited by 108 publications

(91 citation statements)

References 35 publications

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“…A recent report (20) has revealed an important role for enhancer elements in promoting Py viral DNA replication in vivo. Mutants that contain altered viral origin and enhancer sequences have been described (21)(22)(23)(24)(25). The role played by these sequences in replication can now be examined in vitro.…”

Section: Methodsmentioning

confidence: 99%

Species-specific in vitro synthesis of DNA containing the polyoma virus origin of replication.

Murakami¹,

Eki²,

Yamada³

et al. 1986

Proc. Natl. Acad. Sci. U.S.A.

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In vitro replication of DNA containing the polyoma (Py) virus orign of replication has been carried out with cell-free extracts prepared from mouse FM3A cells. The in vitro system required the Py virus-encoded large tumor (T) antigen, DNA containing the Py virus origin of replication, ATP, and an ATP-regenerating system. The replication reaction was inhibited by aphidicolin, suggesting the involvement of DNA polymerase a in this system. Simian virus 40 (SV40) T antigen could not substitute for the Py T antigen. Cell extracts prepared from HeLa cells, a source that replicates SV40 DNA in the presence of SV40 T antigen, replicated Py DNA poorly. Cell-free extracts of monkey and human cells that replicate SV40 DNA have been described (4-7). The in vitro replication of SV40 DNA requires, in addition to suitably prepared cell extracts, circular DNA containing the viral replication origin (ori) and purified SV40 large tumor (T) antigen. Since SV40 T antigen and DNA containing the SV40 replication origin are the only viral components required, this system should be useful for identifying and characterizing the eukaryotic proteins involved in DNA replication. In previous reports (7-9), it was shown that DNA polymerase a (pol a) and DNA primase are essential for the replication of SV40 DNA in vitro and that the source of these enzymes is important in determining whether SV40 DNA replication will occur. In contrast to extracts of human cells, mouse cell extracts supplemented with SV40 T antigen did not support replication of DNA containing the SV40 origin unless supplemented with the pol a-primase complex from HeLa cells.In this report we describe the establishment of a system that replicates Py DNA in vitro; it requires mouse cell extract, the Py replication origin, and Py T antigen. In addition, we have confirmed and further defined the important role played by pol a-primase in determining the species specificity of papovavirus DNA replication. MATERIALS AND METHODSPurification of Py T Antigen. Py T antigen was purified from CV-1 cells infected with the helper-dependent recombinant adenovirus vector Ad-SVR587 (10) as follows. Cells were infected with wild-type adenovirus [2-5 plaque-forming units (pfu) per cell] and Ad-SVR587 recombinant virus (a gift from S. Mansour, T. Grodzicker, and R. Tjian) (5-10 pfu per cell). After incubation for 36 hr at 370C, cells were scraped from thirty 150-mm plates into -3 ml of cold Dulbecco's phosphate-buffered saline (PBS: Ca2+-and Mg2+-free), washed twice with cold PBS, suspended in 10 volumes of pH 9.0 buffer [20 mM Tris HCl, pH 9.0/0.2 M NaCl/1 mM EDTA/1 mM dithiothreitol/10% (vol/vol) glycerol/1% (vol/vol) Nonidet P-40 (NP-40)/1 mM phenylmethylsulfonyl fluoride (PMSF)], and lysed on ice for 10: min. The lysate was centrifuged for 10 min at 2000 rpm in a Sorvall H-6000A rotor, and the supernatant was then centrifuged for 10 min at 20,000 rpm in a Sorvall SS34 rotor. The supernatant was mixed with 0.5 volume of pH 6.8 buffer (0.1 M Tris'HCl, pH 6.8/1 mM EDTA/1 mM dithiothre...

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Section: Methodsmentioning

confidence: 99%

Species-specific in vitro synthesis of DNA containing the polyoma virus origin of replication.

Murakami¹,

Eki²,

Yamada³

et al. 1986

Proc. Natl. Acad. Sci. U.S.A.

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“…However, in the presence of the 21-bp repeat, the 72-bp repeat does not enhance replication any further (4,36,46,47). Unlike SV40, in which the core origin alone can initiate replication at a basal level, the polyomavirus core origin is incapable of initiating replication in the absence of the adjacent transcriptional enhancer region (15,33,48,54,69,70). The enhancer region (or at least a portion of it) is an absolute requirement for replication of polyomavirus DNA.…”

mentioning

confidence: 99%

Replication from a proximal simian virus 40 origin is severely inhibited by multiple reiterations of the 72-base-pair repeat enhancer sequence.

Kumar¹,

Yoon²,

Subramanian³

1988

Mol. Cell. Biol.

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In a previous study in our laboratory, the effect of the reiteration frequency of the simian virus 40 (SV40) 72-base-pair (bp) repeat enhancer on transcription from the proximal SV40 early promoter was investigated (R. Kumar, T. A. Firak, C. T. Schroll, and K. N. Subramanian, Proc. Natl. Acad. Sci. USA 83:3199-3203, 1986). Increasing the enhancer copy number to four increased transcription proportionately; further increments in enhancer copy number reversed this effect, resulting in a decrease in the transcriptional activation. In the present study, the effect of enhancer reiteration on the replication efficiency of plasmids containing the SV40 origin of replication was investigated in transient replication assays in vivo in COS-1 monkey kidney cells producing the SV40 large tumor antigen required for replication. A plasmid containing the SV40 core origin and three copies of the replication-activating, G+C-rich 21-bp repeat promoter element replicated efficiently. Plasmids containing multiple copies of the 72-bp repeat enhancer cloned in head-to-tail linkage adjacent to the 21-bp repeat and the core origin replicated less efficiently; the decrease in replication efficiency could be correlated with the number of copies of the 72-bp repeat; replication was severely curtailed when 10 or more copies of the 72-bp repeat were present. Replication was not significantly inhibited by an increase in the number of copies of the 21-bp repeat to 15 or by the presence of three copies of a 360-bp pBR322 sequence in the immediate vicinity. Multiple copies of the 72-bp enhancer in cis were unable to inhibit replication from a second SV40 origin of replication situated 2 kilobase pairs away from the enhancer reiteration. Replication of four different test plasmids was not inhibited in trans by cotransfection of an excess of a potential competitor plasmid containing a 24-copy reiteration of the 72-bp enhancer. These results indicate that multiple tandem reiterations of the 72-bp enhancer inhibit replication only when they are present in cis adjacent to the origin of replication. Possible explanations for this inhibitory effect, such as an unfavorable local chromatin structure induced by the multimeric enhancer region or reduced or improper communications between factors bound to the multimeric enhancer region and the adjacent replication origin, are discussed.

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“…analysis of deletion mutants has led to the identification of the early (13,30) and late (35,39,53) boundaries required for minimum (core) ori function in vivo. Certain base substitution mutations within the core ori have been shown to abolish replication (36,52).…”

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confidence: 99%

DNA sequence requirements for replication of polyomavirus DNA in vivo and in vitro.

Prives¹,

Murakami²,

Kern³

et al. 1987

Mol. Cell. Biol.

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Cell extracts of FM3A mouse cells replicate polyomavirus (Py) DNA in the presence of immunoaffinitypurified Py large T antigen, deoxynucleoside triphosphates, ATP, and an ATP-generating system. This system was used to examine the effects of mutations within or adjacent to the Py core origin (on) region in vitro. The analysis of plasmid DNAs containing deletions within the early-gene side of the Py core ori indicated that sequences between nucleotides 41 and 57 define the early boundary of Py DNA replication in vitro. This is consistent with previously published studies on the early-region sequence requirements for Py replication in vivo. Deleting portions of the T-antigen high-affinity binding sites A and B (between nucleotides 57 and 146) on the early-gene side of the core on led to increased levels of replication in vitro and to normal levels of replication in vivo. Point mutations within the core ori region that abolish Py DNA replication in vivo also reduced replication in vitro. A mutant with a reversed orientation of the Py core on region replicated in vitro, but to a lesser extent than wild-type Py DNA. Plasmids with deletions on the late-gene side of the core on, within the enhancer region, that either greatly reduced or virtually abolished Py DNA replication in vivo replicated to levels similar to those of wild-type Py DNA plasmids in vitro. Thus, as has been observed with simian virus 40, DNA sequences needed for Py replication in vivo are different from and more stringent than those required in vitro.Replication of polyomavirus (Py) DNA proceeds bidirectionally from a fixed point within the noncoding region of the viral genome (for a review, see reference 16 and references therein). This replication origin (ori) region (Fig. 1) contains multiple T-antigen (T Ag)-binding sites within a G+C-rich 32-base-pair (bp) sequence of dyad symmetry adjacent to a region in which 13 of 14 residues form A * T pairs. It thus bears structural features similar to the replication ori of simian virus 40 (SV40). However, the relationship of the Py ori to other regulatory signals in the noncoding segment is somewhat different from that of SV40. The number and arrangement of large T Ag high-affinity binding sites on the early side of both viral ori regions differ. Also, the relative affinities of Py and SV40 T Ags for binding sites within their respective ori regions are apparently dissimilar (12,14,28,47). Moreover, while both viruses encode enhancer elements, the Py enhancer is almost directly adjacent to the late boundary of the ori region and consists of a series of discrete elements that bear homologies to other enhancer elements including those of SV40, adenovirus Ela, and mouse immunoglobulin genes (2,22,23,26,31,38,46,51,53). By contrast, the SV40 enhancer, a 72-bp repeated sequence (see reference 22 and references therein), is separated from the core ori by a series of G+C-rich sequences (the 21-bp repeats) that form a distinct transcriptional control element to which the cellular transcription factor, Spl, binds (...

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Non-contiguous segments of the polyoma genome required in cis for DNA replication

Cited by 108 publications

References 35 publications

Species-specific in vitro synthesis of DNA containing the polyoma virus origin of replication.

Species-specific in vitro synthesis of DNA containing the polyoma virus origin of replication.

Replication from a proximal simian virus 40 origin is severely inhibited by multiple reiterations of the 72-base-pair repeat enhancer sequence.

DNA sequence requirements for replication of polyomavirus DNA in vivo and in vitro.

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