Mutation dictates the tempo and mode of evolution, and like all traits, the mutation rate is subject to evolutionary modification. Here, we report refined estimates of the mutation rate for a prokaryote with an exceptionally small genome and for a unicellular eukaryote with a large genome. Combined with prior results, these estimates provide the basis for a potentially unifying explanation for the wide range in mutation rates that exists among organisms. Natural selection appears to reduce the mutation rate of a species to a level that scales negatively with both the effective population size (N e ), which imposes a drift barrier to the evolution of molecular refinements, and the genomic content of coding DNA, which is proportional to the target size for deleterious mutations. As a consequence of an expansion in genome size, some microbial eukaryotes with large N e appear to have evolved mutation rates that are lower than those known to occur in prokaryotes, but multicellular eukaryotes have experienced elevations in the genome-wide deleterious mutation rate because of substantial reductions in N e .random genetic drift | replication fidelity M utation is the ultimate source of variation for all evolutionary processes, but like all other traits, the mutation rate itself is subject to evolutionary modification. Unfortunately, because the fidelity of DNA replication and repair is typically very high, mutation-rate estimation is a laborious process, and few comprehensive studies have been performed. However, three phylogenetically general patterns have been suggested. First, for nearly every taxon for which mutations have been cataloged, there is an elevated rate of mutation from G/C to A/T bases relative to the opposite direction (1-3), the only exceptions being derived from indirect polymorphism studies in a few high-GC prokaryotes (3). Second, there is a strong relationship between the mutation rate per nucleotide site per generation (u) and total genome size (4), although the direction of scaling differs dramatically between microbes and multicellular eukaryotes. Third, there appears to be an overall deletion bias in prokaryotes (5, 6), but an overall insertion bias in most eukaryotes because of a predominance of mobile-element activity (7).Summarizing all studies up to 1990, Drake (8) concluded that u varies inversely with genome size (G) in microbes, such that the total genome-wide mutation rate (the product uG) is an approximate constant 0.003 across taxa. This pattern was derived from data on just three microbes (the bacterium Escherichia coli, the budding yeast Saccharomyces cerevisiae, and the filamentous fungus Neurospora crassa) and three bacteriophage. Subsequent observations continue to uphold the inverse relationship postulated by "Drake's rule" for prokaryotes and DNA viruses, but because of the narrow range of prokaryotic genome sizes, the significance remains borderline unless bacteriophage are included (4).In contrast, when such an analysis is restricted to eukaryotes (ranging from yeast to inver...