Restored wetland soils differ significantly in physical and chemical properties from their natural counterparts even when plant community compositions are similar, but effects of restoration on microbial community composition and function are not well understood. Here, we investigate plant-microbe relationships in restored and natural tidal freshwater wetlands from two subestuaries of the Chesapeake Bay. Soil samples were collected from the root zone of Typha latifolia, Phragmites australis, Peltandra virginica, and Lythrum salicaria. Soil microbial composition was assessed using 454 pyrosequencing, and genes representing bacteria, archaea, denitrification, methanogenesis, and methane oxidation were quantified. Our analysis revealed variation in some functional gene copy numbers between plant species within sites, but intersite comparisons did not reveal consistent plantmicrobe trends. We observed more microbial variations between plant species in natural wetlands, where plants have been established for a long period of time. In the largest natural wetland site, sequences putatively matching methanogens accounted for ϳ17% of all sequences, and the same wetland had the highest numbers of genes coding for methane coenzyme A reductase (mcrA). Sequences putatively matching aerobic methanotrophic bacteria and anaerobic methane-oxidizing archaea (ANME) were detected in all sites, suggesting that both aerobic and anaerobic methane oxidation are possible in these systems. Our data suggest that site history and edaphic features override the influence of plant species on microbial communities in restored wetlands.
Diverse soil microbial communities, capable of using numerous metabolic processes to generate energy and assimilate nutrients, mediate key wetland functions. Although recent studies have described microbial community composition and functional gene abundances related to land use, vegetation, and environmental factors (1-3), structure-function relationships in freshwater wetland soils are not well understood. Biogeochemical activities are regulated not only by the size of the microbial biomass but also by the presence, distribution, and abundance of functional guilds (4). Therefore, functional gene markers can provide valuable insight into key biogeochemical processes and their relationships to site properties (5, 6). Given that the underlying mechanisms of major nutrient cycles are related to microbial taxonomic diversity, it is surprising that relatively few studies have described both microbial composition and functional group abundance in freshwater wetlands, a biogeochemical hot spot of carbon (C) and nitrogen (N) cycling.Tidal freshwater wetlands (TFWs) are located in the upper reaches of estuaries along the coastlines of the U.S. Atlantic Ocean, the Gulf of Mexico, and elsewhere, where salinity is low (typically Ͻ0.5 ppt) (7-9). Unlike saline wetlands that tend to produce large quantities of hydrogen sulfide, the main C mineralization pathways in TFWs include methanogenesis (7,8,10) and, depending on miner...