Gastropod molluscs, such as Aplysia, Lymnaea, and Tritonia have been important for determining fundamental rules of motor control and learning and memory because they have individually identifiable neurons. This has allowed neural circuits to be worked out using pair-wise microelectrode recordings. However, neuronal identification that relies on electrophysiology, dye tracing, and immunohistochemistry, limits research to the small number of large neurons, ignoring the much larger number of small neurons. Here we combined high throughput, single-cell RNA sequencing (scRNAseq) with in situ hybridization chain reaction (HCR) to examine gene expression in the head ganglia of the gastropod, Berghia stephanieae. Cluster analysis of the transcriptomic data uncovered multiple neuronal cell clusters, as well as glial, fibroblast, and endothelial cell clusters in the central ring ganglia (CRG: cerebral, pleural, pedal, and buccal ganglia) and the rhinophore ganglia (rhg). Combinatorial molecular signatures were layered on top of size and position using HCR with multiplexed marker genes to help establish specific neuronal class and type phenotypes. Unannotated genes made up significant proportions of the top differentially expressed genes for each cluster, including the most ubiquitously expressed pan-neuronal marker. Neuronal classes expressing major neurotransmitter phenotypes of glutamatergic, cholinergic, and serotonergic neurons were identified. Some neurons co-expressed genes for two neurotransmitters. Serotonergic neurons, not cholinergic neurons, were found to express Unc-4. Among the neurons found to be glutamatergic were a single photoreceptor in the eye and Soluble guanylate cyclase (Sgc)-expressing neurons in the rhg. A sampling of expression patterns from 8 out of the 40 molluscan neuropeptides identified in the single-cell dataset showed the tremendous diversity of neuron types, with few neuropeptides co-expressed in the same neurons. A visually identifiable giant ventral neuron was found to express three peptides and Chat. A subset of neurons in rhg, which contain only small somata (<15 microns), separated into three clusters: 1) glutamatergic + Sgc neurons, 2) nitric oxide synthase (Nos) + pigment dispersing factor (Pdf), and 3) Nos/Pdf-. The three groups were spatially restricted in the rhg. Transcription factors marked a cluster of newly differentiated neurons and were expressed in mature neurons. Six3/6 was expressed only in neurons from the rhinophore and cerebral ganglia, which are anterior-most of the major head ganglia, consistent with Six3/6 anterior segregation in other animals. This study provides the foundation for understanding the fundamental neuronal organization of the gastropod nervous system.