The tripartite motif‐containing gene (TRIM) is an E3 ubiquitin ligase exhibiting antiviral activity by targeting the viral proteins via proteasome mediated ubiquitination. In the present study, we identified and cloned two TRIM gene homologues from Asian seabass (Lates calcarifer), LcTRIM21 and LcTRIM39, each encoding 547 amino acid proteins. The deduced LcTRIM21 protein has a theoretical pI of 6.32 and a predicted molecular mass of 62.11 kDa. LcTRIM39 is predicted to have a pI of 5.57 and a molecular mass of 62.11 kDa. In silico protein localisation results predict that LcTRIM21 and LcTRIM39 homologues were localised in the cytoplasm. Structurally, both the proteins contain an N‐terminal RING zinc‐finger domain, B‐box domain, coiled‐coil domain and C‐terminal PRY/SPRY domain. LcTRIM21 and LcTRIM39 were constitutively expressed in all the tissues and organs examined. LcTRIM21 and LcTRIM39 mRNA expression was significantly upregulated upon challenge with immunostimulants like poly(I:C) challenge, glucan Zymosan A and red‐spotted grouper nervous necrosis virus (RGNNV), which suggests the role of LcTRIM21 and LcTRIM39 in antiviral response against fish viruses. The antiviral role of TRIM homologues can be explored in developing antivirals and strategies to control diseases like Viral nervous necrosis (VNN) caused by fish viruses like RGNNV that cause economic loss to the aquaculture sector.