2015
DOI: 10.3389/fmicb.2015.01170
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New reassortant H5N8 highly pathogenic avian influenza virus from waterfowl in Southern China

Abstract: New reassortant H5N8 highly pathogenic avian influenza viruses were isolated from waterfowl in Southern China. Blast analysis demonstrated that the PB2 gene in these viruses were most closely related to A/wild duck/Shangdong/628/2011 (H5N1), while their NP genes were both more closely related to A/wild duck/Shandong/1/2011 (H5N1) and A/duck/Jiangsu/k1203/2010 (H5N8). However, the HA, NA, PB1, PA, M, and NS genes had the highest identity with A/duck/Jiangsu/k1203/2010 (H5N8). Phylogenetic analysis revealed that… Show more

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Cited by 19 publications
(14 citation statements)
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References 29 publications
(40 reference statements)
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“…Interestingly, there have been no further reports of Group B virus in Korea since the initial report in January 2014 [ 26 ]. In China, several Group B viruses reassorted with LPAI viruses and were reported during 2013–2014 mostly from domestic ducks and wild aquatic birds [ 7 29 41 53 56 ]. Novel reassortant Group B H5N8 viruses containing 5 Eurasian LPAI segments (PB2, PB1, PA, NP, and M) were identified from wild birds found dead in Qinghai Lake, China during May 2016 [ 30 ] and at Uvs-Nuur Lake in Siberia during June 2016 [ 24 ].…”
Section: Spread Of H5n8 Hpai Clade 2344 Group B 2014–2017mentioning
confidence: 99%
“…Interestingly, there have been no further reports of Group B virus in Korea since the initial report in January 2014 [ 26 ]. In China, several Group B viruses reassorted with LPAI viruses and were reported during 2013–2014 mostly from domestic ducks and wild aquatic birds [ 7 29 41 53 56 ]. Novel reassortant Group B H5N8 viruses containing 5 Eurasian LPAI segments (PB2, PB1, PA, NP, and M) were identified from wild birds found dead in Qinghai Lake, China during May 2016 [ 30 ] and at Uvs-Nuur Lake in Siberia during June 2016 [ 24 ].…”
Section: Spread Of H5n8 Hpai Clade 2344 Group B 2014–2017mentioning
confidence: 99%
“…Two H7N9 avian influenza viruses, A/chicken/Guangdong/110/2013 (CK110) and A/chicken/Guangdong/134/2013 (CK134), were identified using reverse transcription polymerase chain reaction (RT-PCR), hemagglutination tests, and hemagglutination inhibition (HI) tests as standard protocols. Detailed information describing these methods is available in previous publications ( 19 ). Evaluation of 50% egg infective doses (EID 50 ) was calculated using the Reed–Muench method ( 20 ).…”
Section: Methodsmentioning
confidence: 99%
“…The collected samples were inoculated into amnionic and allantoic cavities of 9–10-day-old specific-pathogen-free (SPF) embryonated chickens eggs. After incubating for 48 h at 37°C, the allantoic fluids were harvested, and the reverse-transcription polymerase-chain reaction (RT-PCR), hemagglutination test, and hemagglutination inhibition (HI) test were performed to identify and subtype the positive influenza samples as described previously (Song et al, 2015 ). Finally, virus allantoic fluids were harvested and stored at −80°C before use.…”
Section: Methodsmentioning
confidence: 99%
“…Viral RNA was extracted from allantoic fluid with Trizol LS Reagent (Life Technologies, Inc.) and transcribed into cDNA with SuperScript III reverse transcriptase (Invitrogen, China). PCR was performed as described previously (Song et al, 2015 ). The products were purified with the QIAquick PCR purification kit (QIAGEN) following the manufacturer's instructions and sequencing was performed by using an ABI Prism 3730 genetic analyzer (Applied Biosystems) by Shanghai Invitrogen Biotechnology Co., Ltd.…”
Section: Methodsmentioning
confidence: 99%