“…With 16 recent species (Froese and Pauly, 2006), genus Polypterus shows a lower intraspecific diversification, while genus Erpetoichthys includes the only one living species, E. calabaricus (Daget and Desoutter, 1983;Gayet et al, 2001;Min and Schultze, 2001). In scientific literature, various molecular attempts to arrange the taxonomy of polypterids corresponding to recent systematic have been made (Zardoya et al, 1998; Meyer, 2001; Rasmussen and Arnason, 1999a,b;Venkatesh et al, 1999Venkatesh et al, , 2001Arnason et al, 2001;Kikugawa et al, 2004), also if phylogeny of sequences need not to be always the phylogeny of taxa, but currently they are considered the most primitive and monophyletic Actynopterygian fish group (Cloutier and Arratia, 2004;Gemballa et al, 2003;Britz and Bartsch, 2003;Chiu et al, 2006;Mallatt and Winchell, 2007;Egan et al, 2009), even if the inner relationships of the species actually belonging to this family remain poorly resolved (Otero et al, 2006;Claeson et al, 2007). Different studies (Kazazian, 2004;Britten, 2004; enlightened the role of Non-LTR retrotransposons as drivers of genome evolution, but the keystone to the value of SINEs as systematic characters (Ohshima et al, 1996;Hillis, 1999;Bowen and Jordan, 2002;Ogiwara et al, 2002) is their widely dispersed, irreversible and progressive re-integration into the hosts genome.…”