2022
DOI: 10.3390/microorganisms10020455
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New Alphaproteobacteria Thrive in the Depths of the Ocean with Oxygen Gradient

Abstract: We survey here the Alphaproteobacteria, a large class encompassing physiologically diverse bacteria which are divided in several orders established since 2007. Currently, there is considerable uncertainty regarding the classification of an increasing number of marine metagenome-assembled genomes (MAGs) that remain poorly defined in their taxonomic position within Alphaproteobacteria. The traditional classification of NCBI taxonomy is increasingly complemented by the Genome Taxonomy Database (GTDB), but the two… Show more

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Cited by 13 publications
(85 citation statements)
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“…Iterative PSI-BLAST searches of representative proteins [2,43] were carried out to evaluate their completeness and re-annotation congruity.…”
Section: Methodsmentioning
confidence: 99%
See 4 more Smart Citations
“…Iterative PSI-BLAST searches of representative proteins [2,43] were carried out to evaluate their completeness and re-annotation congruity.…”
Section: Methodsmentioning
confidence: 99%
“…We routinely kept the recently identified New clades of marine MAGs as a separate lineage from related Sneathiellales (including also Minwuiales) because of the diversity in their bioenergetic traits [2]. We also kept the lineage of Iodidimonadales separate from other SERIK groups [2] essentially because of their unique synteny of M16B-ISP (Fig. 1 and Supplementary Fig.…”
Section: Methodsmentioning
confidence: 99%
See 3 more Smart Citations