Sodium valproate (VPA) is a histone deacetylase (HDAC) inhibitor, widely prescribed in the treatment of bipolar disorder, and yet the precise modes of therapeutic action for this drug are not fully understood.After exposure of the rat serotonergic cell line RN46A to VPA, RNA-sequencing (RNA-Seq) analysis showed widespread changes in gene expression. Analysis by multiple pipelines revealed as many as 230 genes were significantly upregulated and 72 genes were significantly downregulated. A subset of 23 differentially expressed genes was selected for validation using the nCounter® platform, and of these we obtained robust validation for ADAM23, LSP1, MAOB, MMP13, PAK3, SERPINB2, SNAP91, WNT6, and ZCCHC12. We investigated the effect of lithium on this subset and found four genes, CDKN1C, LSP1, SERPINB2 and WNT6 co-regulated by lithium and VPA. We also explored the effects of other HDAC inhibitors and the VPA analogue valpromide on the subset of 23 selected genes.Expression of eight of these genes, CDKN1C, MAOB, MMP13, NGFR, SHANK3, VGF, WNT6 and ZCCHC12, was modified by HDAC inhibition, whereas others did not appear to respond to several HDAC inhibitors tested. These results suggest VPA may regulate genes through both HDAC-dependent and independent mechanisms. Understanding the broader gene regulatory effects of VPA in this serotonergic cell model should provide insights into how this drug works and whether other HDACi compounds may have similar gene regulatory effects, as well as highlighting molecular processes that may underlie regulation of mood.Dysregulation of the serotonergic system has been implicated in the pathophysiology of mood disorders [18]. The serotonergic neurons originate from the median and the dorsal raphe nucleus in the brain stem and project to different brain regions, where they secrete serotonin which regulates mood [37]. In this study, we examined the gene expression effects of VPA using the neural cell line RN46A, derived from the rat medullary raphe region [38], which has been used previously to study gene expression in response to antidepressants and mood stabilisers [39][40][41][42][43][44]. Differentiated RN46A cells express all 5-HT receptors 5-HT1A, 5-HT1B, 5-HT2A and 5-HT2C and the serotonin transporter SERT [38,45].Understanding the transcriptional effects of VPA in a relevant cellular context may provide clues to its mechanisms of action. Previous studies in our laboratory using the RN46A cell line revealed differential gene expression in response to VPA exposure [41,44]. In this paper, we sought to extend these findings using RNA-Seq as a discovery tool for differentially expressed genes (DEG), followed by validation of a subset of these genes using an orthogonal gene expression analysis method. Furthermore, we examined the action of other mood stabilizing drugs and other HDACi compounds on expression of this subset of genes.
Methods
Cell culture and RNA extractionThe RN46A cells were maintained at 33 o C in Dulbecco's Modified Eagle Medium: Nutrient Mixture F-12 (DMEM/F12; ThermoF...