Zolpidem is a nonbenzodiazepine GABA A receptor modulator that binds in vitro with high affinity to GABA A receptors expressing ␣ 1 subunits but with relatively low affinity to receptors expressing ␣ 2 , ␣ 3 , and ␣ 5 subunits. In the present study, it was investigated whether this subtype selectivity could be detected and quantified in vivo. Three doses (1.25, 5, and 25 mg) of zolpidem were administered to rats in an intravenous infusion over 5 min. The time course of the plasma concentrations was determined in conjunction with the change in the -frequency range of the EEG as pharmacodynamic endpoint. The concentration-effect relationship of the three doses showed a dosedependent maximum effect and a dose-dependent potency. The data were analyzed for one-or two-site binding using two pharmacodynamic models based on 1) the descriptive model and 2) a novel mechanism-based pharmacokinetic/pharmacodynamic (PK/PD) model for GABA A receptor modulators that aims to separates drug-and system-specific properties, thereby allowing the estimation of in vivo affinity and efficacy. The application of two-site models significantly improved the fits compared with one-site models. Furthermore, in contrast to the descriptive model, the mechanism-based PK/PD model yielded dose-independent estimates for affinity (97 Ϯ 40 and 33,100 Ϯ 14,800 ng ⅐ ml Ϫ1 ). In conclusion, the mechanismbased PK/PD model is able to describe and explain the observed dose-dependent EEG effects of zolpidem and suggests the subtype selectivity of zolpidem in vivo.The GABA A receptor is a hetero-oligomeric protein consisting of five subunits that form an integral Cl Ϫ channel (for review, see Sieghart, 1995). To date, various GABA A receptor subunits and their isoforms (␣ 1 -␣ 6 ,  1 - 3 , ␥ 1 -␥ 3 , ␦, , ⑀, , and ) have been described (Barnard et al., 1998;Sieghart, 2000). In theory, these subunits can assemble to many GABA A receptor subtypes. In the central nervous system, however, functional GABA A receptors are formed mainly by combinations of ␣, , and ␥ subunits (Barnard et al., 1998).According to a historical classification, benzodiazepines exert their anxiolytic/hypnotic actions through the activation of two pharmacologically distinct binding sites, 1 (BZ 1 ) and 2 (BZ 2 ), which were classified on the basis of differing affinities of CL 218.872 and zolpidem, respectively. In the meantime, it has been shown in in vitro investigations that zolpidem, which is a hypnotic of the imidazopyridine class, differs from conventional benzodiazepines (e.g., flunitrazepam and diazepam) and other hypnotics (zopiclone). Zolpidem displays high affinity at GABA A receptors expressing ␣ 1 subunits (K i ϭ 15-350 nM) but a relatively low affinity at receptors expressing ␣ 2 , ␣ 3 , and ␣ 5 subunits (K i ϭ 4 -40 M), whereas benzodiazepines have equal affinity for the various GABA A receptor subtypes (Pritchett et al., 1989;Ruano et al., 1992;Benavides et al., 1993;Luddens and Korpi, 1995). In addition, it has become clear that receptors with ␣ 1 subunits me...