Neuraminidase (NA) inhibitors are a class of antiviral drugs developed to target the influenza virus a highly contagious virus that can cause severe respiratory illness and death. Although several NA inhibitors have been developed in the last decade, it is still poorly understood how they interact in the active site of the enzyme and which chemical and structural features potentiate their inhibitory activity. Taking this into account, we analyze in this article the inhibitory activity of 236 known NA inhibitors using molecular docking simulations. The protocol performed in this work, based on AutoDock, demonstrated to be very efficient in differentiating NA inhibitors with DG binding above 211.7 kcalÁmol 21 . The results have shown that the best inhibitors are those that closely resemble the structure of the natural substrate, but explore additional areas of the active site with which they interact strongly and, therefore, potentiate their inhibitory activity. The best NA inhibitors are characterized by a central saturated six-member ring filling almost completely the space available in the active site pocket. In addition, they contain both a carboxylate and an acetamide group, bound to the central ring structure, which allow them to interact with five arginines, organized in a triad (Arg371, Arg118, Arg292) and a pair (Arg151, Arg152). These interactions are very strong and act as two anchors that fix the compounds in the active site. The inhibitory activity of the compounds is improved if they have hydrophobic groups pointing toward a hydrophobic region of the active site, where Ile222 is located, and when they have amine or guanidine groups pointing toward three glutamates (Glu277, Glu276, Glu227). The studies performed here lay the foundations for the rational design of new and more efficient drugs to fight the influenza virus.
K E Y W O R D SAutoDock, inhibitors, molecular docking, neuraminidase 1 | I N TR ODU C TI ON Influenza virus infections account for significant morbidity, mortality, and healthcare expenditures worldwide. [1,2] The Influenza virus is an RNA virus (single strand) that belongs to the Orthomyxoviridae family. The pathogen has a segmented negative-strand RNA genome that codes for two glycoproteins: hemagglutinin (HA) and neuraminidase (NA). These proteins are located in the virus capsid and play a key role in the interaction with the host cell during infection [3] HA is responsible for virus attachment to the cell sialic acid receptors. After virus replication, NA then cuts the link between HA and the receptors to facilitate the release and spread of the influenza virus.Considering that the A/H1N1 influenza virus pandemic in 2009 caused as many as ten times more deaths than originally estimated, these two proteins have become important drug targets and catalyzed an unprecedented drug discovery/development effort to stem future epidemics. [4] However, this process is far from being simple. As in many other viruses, the genome of influenza viruses is continuously changing by mutations or by ...