Prosomes and heat shock protein (HSP) complexes isolated from the cytoplasm of Drosophila cells in culture were biochemically and immunologically characterized. The two complexes were found to separate on sucrose gradients, allowing the analysis of their protein constituents by two-dimensional polyacrylamide gel electrophoresis and by reaction with anti-HSP sera and prosome-specific monoclonal antibodies. All of the prosomal proteins were found to be clearly distinct from the HSP; none of the prosomal proteins was synthesized de novo in heat shock. However, an antiprosome (anti-p27K) monoclonal antibody (mouse anti-duck) recognizing the Drosophila p29K prosomal protein allowed immunoprecipitation from a heat-shocked postmitochondrial supernatant of the crude HSP complex, including the low-and the high-molecular-weight components, in particular the 70 x 103-molecular weight HSP. The highly purified small 16S HSP complex still contained this preexistent p29K prosomal protein, which thus also seems to be a metabolically stable constituent of the HSP complex. The significance of this structural and possibly functional relationship between prosomes and HSP, involving the highly ubiquitous and evolutionarily conserved prosomal protein p27/29K, remains to be elucidated.The heat shock response of most eucaryotic cells involves a strong increase in the synthesis of a small set of evolutionarily conserved proteins known as the heat shock proteins (HSPs). A similar response is induced by a wide variety of other stress agents (for reviews, see references 6, 31, and 41). In eucaryotic cells, HSPs have also been shown to be induced by ethanol (29), by arsenite (53), in recovery from anoxia (38, 39), by cadmium (12), and by hydrogen peroxide (13). The predominant inducible HSPs can generally be classified into three major groups based on their molecular sizes of 80 to 90, 65 to 75, and 20 to 30 kilodaltons (kDa). The last group (referred to as the low-molecular-weight HSPs) is especially well characterized in Drosoplila cells.It has been postulated that these proteins play an important role during embryonic development (7), hormonal induction in Drosophilia melanogaster (23), and normal cell growth (56) and that HSPs have a protective effect (50). However, their precise cellular function remains obscure (41, 55; see also Discussion).The small HSPs were shown to exist as a complex in the cytoplasm, forming a characteristic band in density gradients including protein and RNA (2-4). Some of the HSPs were thought to be primarily associated with the nucleus during the heat shock (24). More recent data of Bonner and collaborators (27) indicate, however, that the HSPs are associated with the intermediate filaments of the cytoplasm and that upon heat shock, these cytoskeletal elements collapse onto the nuclear membrane. Therefore, it seems that the small HSPs exist essentially in the cytoplasm and not in the nucleus, as assumed previously on the basis of the fact that after heavy stress, they co-isolate with the nuclei. The most heter...