Near-Complete Genome Sequence of an H5N1 Avian Influenza Virus Strain Isolated from a Swan in Southwest Kazakhstan in 2006

Burashev, Yerbol; Strochkov, Vitaliy; Sultankulova, Kulyaisan; Orynbayev, Mukhit; Kassenov, Markhabat; Kozhabergenov, Nurlan; Shorayeva, Kamshat; Sadikaliyeva, S. О.; Issabek, Aisha; Almezhanova, Meirym; Nakhanov, Aziz; Savitskaya, Irina; Zakaryа, Kunsulu

doi:10.1128/mra.00016-20

Cited by 3 publications

(3 citation statements)

References 6 publications

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“…Первые вспышки высокопатогенного гриппа птиц в Казахстане были зарегистрированы в 2005 году [5,6]. Последние 15 лет в птицеводческих хозяйствах нашей страны вспышки высокопатогенного гриппа птиц не регистрировали.…”

Section: Discussionunclassified

Monitoring of Highly Pathogenic Avian Influenza in Kazakhstan

Bopi,

Omarova,

Rystayeva

et al. 2022

jour

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This article presents data from monitoring studies on avian influenza in the northern regions of Kazakhstan. Collection of samples from domestic and wild birds was carried out in the northern regions of the Kazakhstan. Detection and typing of the influenza virus was carried out by PCR and sequencing. The biological activity of the isolated viruses was determined on 9-10 day old developing chicken embryos. As a result of the research, it was found that the cause of illness and death of birds in the farms of the Akmola and North Kazakhstan regions in 2021 is an avian influenza. Influenza A/H5N8 virus was found in samples from poultry delivered from farms in Akmola (53.8%) and North Kazakhstan (16.7%) regions, as well as in a sample from a wild goose that lived on Lake Koybagar in Kostanay region. Influenza viruses isolated from wild and domestic birds are classified as subtype A/H5N8 to Clade 2.3.4.4b along the Eurasian line II (Eurasian HPAIV H5N8 Lineage II). The spread of avian influenza in the population of wild and domestic birds in the northern regions of Kazakhstan requires the veterinary services to take measures for developing effective control measures based on molecular epidemiology data.

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Section: Discussionunclassified

Monitoring of Highly Pathogenic Avian Influenza in Kazakhstan

Bopi,

Omarova,

Rystayeva

et al. 2022

jour

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“…These overlap with the Eurasia-Africa flyway in the Caspian region. See also Sayatov et al, 2007;Kydyrbayev et al, 2010;Bogoyavlenskiy et al, 2012;Tabynov et al, 2014;Burashev et al, 2020. From the point of view of the evolution of avian influenza viruses and their transfer to other geographical regions, researchers of the Federal Centre of Animal Health, Vladimir, Russia (Zinyakov et al, 2022) which the researchers have collectively referred to as Caspian Region Viruses (VCR). For these subtypes, a similar clustering of genomic segments was determined with isolates of the H5N5 subtype influenza A virus, which were identified in Europe in winter and spring .…”

Section: Other Detections Of Hxnx Strains In the Caspian Region 2004-...mentioning

confidence: 99%

Pinnipeds and avian influenza: a global timeline and review of research on the impact of highly pathogenic avian influenza on pinniped populations with particular reference to the endangered Caspian seal (Pusa caspica)

Gadzhiev,

Petherbridge,

Sharshov

et al. 2024

Front. Cell. Infect. Microbiol.

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This study reviews chronologically the international scientific and health management literature and resources relating to impacts of highly pathogenic avian influenza (HPAI) viruses on pinnipeds in order to reinforce strategies for the conservation of the endangered Caspian seal (Pusa caspica), currently under threat from the HPAI H5N1 subtype transmitted from infected avifauna which share its haul-out habitats. Many cases of mass pinniped deaths globally have occurred from HPAI spill-overs, and are attributed to infected sympatric aquatic avifauna. As the seasonal migrations of Caspian seals provide occasions for contact with viruses from infected migratory aquatic birds in many locations around the Caspian Sea, this poses a great challenge to seal conservation. These are thus critical locations for the surveillance of highly pathogenic influenza A viruses, whose future reassortments may present a pandemic threat to humans.

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“…Based on the hemagglutinin (HA) and neuraminidase (NA), 18 H and 11 N subtypes, respectively, are currently known ( 2 ). Since 2005, a panepizootic epidemic of avian influenza caused by the highly pathogenic H5N1 strains was reported in many countries, most likely spread by wild migratory and waterfowl birds ( 3 ). According to the World Organization for Animal Health (OIE), it was noted that since 2013, a second panepizootic wave of bird flu has been observed ( https://www.who.int/influenza/human_animal_interface/influenza_h7n9/140225_H7N9RA_for_web_20140306FM.pdf?ua=1 ).…”

Section: Announcementmentioning

confidence: 99%

Complete Coding Genome Sequence of an Avian Influenza A/H3N8 Virus Strain Detected in North Kazakhstan in 2018

Sultankulova

Orynbayev

Kozhabergenov

et al. 2020

Microbiol Resour Announc

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Near-Complete Genome Sequence of an H5N1 Avian Influenza Virus Strain Isolated from a Swan in Southwest Kazakhstan in 2006

Abstract: We report the near-complete genome sequence of an influenza H5N1 virus strain isolated from a dead swan on the southeastern Caspian seashore in 2006. The results of the surface protein HA phylogenetic analysis showed that the A/swan/Mangystau/3/2006 virus belongs to the EA-nonGsGD clade.

Cited by 3 publications

References 6 publications

Monitoring of Highly Pathogenic Avian Influenza in Kazakhstan

Monitoring of Highly Pathogenic Avian Influenza in Kazakhstan

Pinnipeds and avian influenza: a global timeline and review of research on the impact of highly pathogenic avian influenza on pinniped populations with particular reference to the endangered Caspian seal (Pusa caspica)

Complete Coding Genome Sequence of an Avian Influenza A/H3N8 Virus Strain Detected in North Kazakhstan in 2018

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