2004
DOI: 10.1554/03-577
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Natural Selection and the Organ-Specific Differentiation of Hiv-1 V3 Hypervariable Region

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Cited by 15 publications
(15 citation statements)
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References 57 publications
(70 reference statements)
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“…3 Anatomical compartments representing discrete sites of independent viral evolution include the central nervous system, genital tract, kidney epithelium, and lymph nodes. [10][11][12][13][14] Whether the same is true within TB coinfected granulomas is currently unclear and inconclusive. [15][16][17] Understanding the dynamics of viral evolution within this unique highly compartmentalized but immunologically active environment is important to virus eradication strategies.…”
Section: Introductionmentioning
confidence: 99%
“…3 Anatomical compartments representing discrete sites of independent viral evolution include the central nervous system, genital tract, kidney epithelium, and lymph nodes. [10][11][12][13][14] Whether the same is true within TB coinfected granulomas is currently unclear and inconclusive. [15][16][17] Understanding the dynamics of viral evolution within this unique highly compartmentalized but immunologically active environment is important to virus eradication strategies.…”
Section: Introductionmentioning
confidence: 99%
“…Instead, the metapopulation concept, where a population is made up of several discrete subpopulations that undergo turnover through frequent foundation and extinction events, could play a central role in the evolution of HIV-1 (17). Differentiation of subpopulations in various organs of the same host has been further confirmed more recently for HIV (24,30,33,37) and has also been reported for other animal virus species such as Hepatitis C virus (1,9,25) and TT virus (29).…”
mentioning
confidence: 95%
“…Sophisticated genetic tests can detect such population structure in a sample of viral sequences (4,39,49). Using two complementary tests of population structure (14,43), we analyzed viral sequences from multiple sources within individual patients in order to determine whether a source other than circulating resting CD4 ϩ T cells contributes to residual viremia and viral persistence.…”
mentioning
confidence: 99%
“…The second test of population structure involved the analysis of molecular variance (AMOVA) (4,14,39). This test is implemented in the software package Arlequin (2).…”
mentioning
confidence: 99%