Natural diversity of heat-induced transcription of retrotransposons inArabidopsis thaliana
Wenbo Xu,
Michael Thieme,
Anne C. Roulin
Abstract:Transposable elements (TEs) are major components of plant genomes, profoundly impacting the fitness of their hosts. However, technical bottlenecks have long hindered our mechanistic understanding of TEs. Using RNA-Seq and long-read sequencing with Oxford Nanopore Technologies direct cDNA sequencing, we analyzed the heat-induced transcription of TEs in three natural accessions of Arabidopsis thaliana (Cvi-0, Col-0, and Ler-1). In addition to the well-studied ONSEN retrotransposon family, we identified Copia-35 … Show more
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