Deep learning-based contact prediction in C-I-TASSER; violin plots for portions of residues predicted by TMHMM2.0 to be within transmembrane helices for JCVI-syn3.0 proteins that are annotated versus unannotated by C-I-TASSER/ COFACTOR with C-score > 0.5 for specific GO terms in the MF, BP, and CC aspects; structural alignment of the predicted structure of MMSYN1_0877 with the nine closest structural homologues identified in the Protein Data Bank; substrate binding domains for ECF systems targeting riboflavin; and a random PPI network for syn3.0, where 2483 of all 95,703 protein pairs are randomly selected as the positive PPI pairs (PDF)