The O-GlcNAc modification of Notch receptors regulates Notch ligand interactions in a manner distinct from other forms of O-glycans on epidermal growth factor-like (EGF) repeats of Notch receptors. Although many proteins, besides Notch receptors, are expected to be O-GlcNAcylated by EGF domain-specific O-GlcNAc transferase (EOGT), only a small number of proteins have been reported to be modified in vivo, and elongated O-GlcNAc glycans have not been extensively explored. To extend our view of the specificity and variety of the glycan modification, we conducted a comprehensive analysis of O-GlcNAc glycans on NOTCH1 in mammals. Mass spectrometric analysis of NOTCH1 fragments expressed in HEK293T cells revealed that several EGF domains with putative O-GlcNAcylation sites were hardly modified with O-GlcNAc. Although amino acid residues before the modification site are preferentially occupied with aromatic residues, Phe and Tyr are preferable to Trp for the apparent modification with O-GlcNAc. Furthermore, a minor form of fucosylated O-GlcNAc glycans was detected in a subset of EGF domains. Fucosylation of O-GlcNAc glycans was enhanced by FUT1, FUT2, or FUT9 expression. The FUT9-dependent Lewis X epitope was confirmed by immunoblotting using an anti-Lewis X antibody. As expected from the similarity in the glycan structures, the Lexis X antigen was detected on O-fucose glycans. Notably, the Lewis X structure on O-glycans was identified in endogenous NOTCH1 isolated from MCF7 cells. Our results refined the putative consensus sequence for the EOGT-dependent extracellular O-GlcNAc modification in mammals and revealed the structural diversity of functional Notch O-glycans.HighlightsComprehensive analysis of O-GlcNAc glycan on NOTCH1 refined O-GlcNAcylation sequonsFUT1, FUT2, and FUT9 modify O-GlcNAc glycans in the selective EGF domains of NOTCH1The Lewis X epitope can be formed on both O-GlcNAc and O-fucose glycans on NOTCH1In BriefThis study performed comprehensive mass spectrometric analyses of O-GlcNAc glycans in the NOTCH1 extracellular region in cultured mammalian cells. The results indicated that EOGT-dependent O-GlcNAcylation occurs on a limited number of EGF repeats harboring putative O-GlcNAcylation sites, refining the sequons for extracellular O-GlcNAc modification in mammals. Moreover, novel structures with fucosylated O-GlcNAc glycans were identified, and a similar structure was detectable on O-fucose glycans, extending the view of structural diversity of functional Notch O-glycans.