Two new cytotoxic dilactones, bisisorhizopodin (1) and isorhizopodin (2), together with known divalent actin depolymerizer rhizopodin (3), were isolated from the culture broth of a myxobacterium Myxococcus stipitatus. Spectroscopic analyses established that 1 and 2 are doubly and singly acyl-migrated isomers of 3, respectively, and comparison of their cytotoxicity revealed gradual decrease in the activity as the size of the ring contracted. Because the side chains of macrolide toxins uniformly block the contact between the actin protomers, the present result demonstrates substantial contribution of structurally diverse rings to the affinity of macrolide toxins for its target protein.Key words rhizopodin; Myxobacteria; actin; cytotoxicity Myxobacteria are a distinctive group of bacteria 1) that alternate their life form in response to the nutritional status: when eutrophic they take a motile and predatory lifestyle, but once eating up available food, they aggregate together and form fruiting bodies to withstand the food-depleted condition as dormant myxospores. Their secondary metabolites are highly unique and often accompanied by potent bioactivity, which make these organisms as one of the best resources for drug discovery from nature.2) In fact, ixabepilone, derived from epothilone B produced by Sorangium cellulosum, has been approved in 2007 for the treatment of metastatic breast cancer in the U.S.A.
3)Myxobacteria has been accepted as mesophilic soil bacteria, but attempts to discover new species from other environments identified halophilic, 4-7) thermophilic, 8,9) psychrophilic, 10) or anaerobic lineages, 11) revealing rather a broader habitat range for this group. And more importantly, two of the halophiles were found to produce unprecedented metabolites with a β-methoxyacrylate group such as haliangicins [12][13][14] and miuraenamides. 15,16) As part of our program to discover new bioactive metabolites from underexploited bacterial resources, we have collected myxobacteria from hotspring environments and screened their fermentation products for cytotoxicity and antimicrobial activity. While most of the cytotoxic extracts contained myxothiazole A 17,18) and exhibited broad antimycotic activity, three were found to selectively inhibit the growth of Saccharomyces cerevisiae. Intrigued by this unique activity, one of the hit strains coded YA1-5B-2, identified as Myxococcus stipitatus based on 16S ribosomal DNA (rDNA) sequence analysis, was chosen for further study. The active principles in its fermentation extract were pursued under the guidance of cytotoxicity against P388 murine leukemia, which resulted in the isolation of the known rhizopodin (3) and its two new congeners (Fig. 1). 3 is a fungicidal and cytotoxic C2-symmetric dilactone discovered from the same organism, [19][20][21][22] and exerts potent bioactivity through depolymerization of actin. 22,23) Actin is the most common cytoskeletal protein that undertakes motility function in eukaryotic cells, and small molecules that perturb its assembly-dis...