Abstract:A systematic survey for myxomycetes was carried out in 2011–2014 and 2017 at 106 localities in mountain tropical forests of Bidoup Nui Ba and Chu Yang Sin national parks (Dalat Plateau, southern Vietnam). In total, the survey yielded 652 records, of which 358 were field collections
and 294 were collections obtained from 819 moist chamber cultures prepared with samples taken from the bark surface of living trees, ground and aerial litter and coarse woody debris. Determinations resulted in 105 taxa from… Show more
“…(4) LOW INPUT: Taxonomically critical material is often very scanty, especially specimens from moist-chamber cultures which are crucial for surveys in arid (Schnittler et al 2015b) and tropical regions (Novozhilov et al , 2019. Therefore, one needs to obtain material for sequencing without destroying a sporocarp.…”
We present a workflow for efficient barcoding of myxomycete fructifications, which (i) requires less than 1000 spores, (ii) allows to collect spores with only a needle, (iii) works without any commercial kits, and (iv) is optimized for the use of 96-well PCR plates throughout the process. Specimens of 291 dark-spored nivicolous myxomycetes and 121 bright-spored members of the Trichiaceae were sequenced for the barcode marker 18S rDNA (SSU) with a low rate of failure and no detectable cross-contamination. Crude DNA extracts can be stored for further analyses: the elongation factor 1 alpha gene (EF1A), a single-copy marker, was successfully amplified after four weeks of storage.As such our procedure will allow a time- and cost-efficient barcoding of large series of specimens.
“…(4) LOW INPUT: Taxonomically critical material is often very scanty, especially specimens from moist-chamber cultures which are crucial for surveys in arid (Schnittler et al 2015b) and tropical regions (Novozhilov et al , 2019. Therefore, one needs to obtain material for sequencing without destroying a sporocarp.…”
We present a workflow for efficient barcoding of myxomycete fructifications, which (i) requires less than 1000 spores, (ii) allows to collect spores with only a needle, (iii) works without any commercial kits, and (iv) is optimized for the use of 96-well PCR plates throughout the process. Specimens of 291 dark-spored nivicolous myxomycetes and 121 bright-spored members of the Trichiaceae were sequenced for the barcode marker 18S rDNA (SSU) with a low rate of failure and no detectable cross-contamination. Crude DNA extracts can be stored for further analyses: the elongation factor 1 alpha gene (EF1A), a single-copy marker, was successfully amplified after four weeks of storage.As such our procedure will allow a time- and cost-efficient barcoding of large series of specimens.
“…This species is initially considered as truly coprophilous, which is known from very few collections in the world. Novozhilov et al (2020) first reported this species for the county and that is also noteworthy to mention that the species Trichia pappilata is only reported in Vietnam in comparison among other countries in the Southeast Asian region.…”
Section: Myxomycetes Occurrences In Leaf Litter Of Northern Vietnammentioning
confidence: 96%
“…Some previous countries in the region that have information for myxomycete studies are the Philippines with 159 species (Dagamac and dela Cruz 2015;Macabago et al 2017;Bernardo et al 2018), Thailand with 145 (Ko Ko et al 2010;Dagamac et al 2017b), Indonesia with 119 (Farr 1990;Rosing et al 2011), Republic of Singapore with 76 (Rosing et al 2011), Myanmar with 67 (Ko Ko et al 2013a), and Laos with 44 (Ko Ko et al 2013b). In Vietnam, most of the myxomycete studies have been investigated in the southern part of the country (Novozhilov et al 2018(Novozhilov et al , 2020 while the number of myxomycete studies on the other parts of the country is relatively scarce. Furthermore, the first myxomycete report for Vietnam started only in 2009 that initially annotated 23 species by Van Hooff (2009), wherein the rare species Cribraria tecta was reported as a new species for science.…”
Section: Introductionmentioning
confidence: 99%
“…Stephenson et al (2019) have reported the presence of Barbeyella minutissima, the rare temperate myxomycetes that are commonly associated with Picea trees, on higher elevation areas of Southern Vietnam. But perhaps, the recent publication of Novozhilov et al (2020) about the long term systematic survey in Bidoup Nui Ba and Chu Yang Sin national parks is the most extensive work conducted for the country so far with 105 taxa being reported, forty-two of which are new records for Vietnam including a Badhamia species suspected to be new to science. All these efforts now amounted to 174 myxomycetes species for Vietnam.…”
During the last years, much of the diversity studies of myxomycetes (plasmodial slime molds) have been concentrated mostly in the Southern region of Vietnam. Moreover, information on leaf litter inhabiting myxomycetes for the country is still in scarcity. Hence, this study aims to assess the occurrence and distribution of leaf litter inhabiting myxomycetes in different forest types in the subtropical northern and coastal tropical monsoon central part of the country. Samples of aerial and ground leaf litter that were used to prepare moist chamber cultures in the laboratory were collected in (1) Ba Vi National Park, Ha Noi, (2) Ho Nui Coc, Thai Nguyen, and (3) coastal forest patches in Da Nang. A total of 24 species belonging to 10 genera, wherein the majority of these myxomycete species appeared abundantly (11 species) is reported for this study. Based on species richness, Ha Noi harbored the highest number of myxomycete species. Leaf litter inhabiting myxomycete communities between aerial and ground substrates shared a high level of similarity based on their species composition and relative abundance. Highest level of similarity of leaf litter inhabiting myxomycete asssemblages is also reported between Ha Noi and Da Nang (CC = 0.78, PS = 0.56). This research study is the first step in understanding the complex myxomycete ecology of leaf inhabiting myxomycetes and would help filling now the large gap in one of the unexplored tropical areas of the world.
“…Furthermore, the first local habitat suitability modeling using the tropical cosmopolitan species Diderma hemisphaericum (Bull) Hornem has demonstrated range expansion of the species on various climate change scenarios (Almadrones-Reyes & Dagamac 2018). Recently, the Paleotropical Asia-Pacific zone had also gained its momentum of more exhaustive myxomycete surveys wherein Southeast Asian countries like Vietnam (174 species, Nguyen et al 2019, Novozhilov et al 2020 and Thailand (145 spe Stephenson (Novozhilov & Stephenson 2015)]. To contribute to this growing trend in myxomycete distribution studies, the primary objective of the present study was to investigate the assemblages of myxomycetes in two lowland forests of Mindoro Island.…”
Million years ago, the island of Mindoro separated from mainland Asia. Its geologic origin led to many species distinct from Asia and the other islands of the Philippines. In this study, two lowland mountain forests – Mt. Malasimbo (MM) in Puerto Galera, Oriental Mindoro, and Mt. Siburan (MS) in Sablayan, Occidental Mindoro – were surveyed for myxomycetes. The combined opportunistic sampling in the field and the setting up of 1,260 moist chamber cultures retrieved a total of 1,007 fruiting body collections representing 50 species from 17 genera. A relatively higher number of taxa (49 species) was recorded in Mt. Siburan than in Mt. Malasimbo (36). Seventeen species were classified as rare with only four taxa that were widely distributed in both study sites, namely, <em>Arcyria cinerea</em>, <em>Perichaena pedata</em>, <em>Diderma hemisphaericum</em>, and <em>Lamproderma scintillans</em>. Higher species diversity and richness were noted for Mt. Siburan than Mt. Malasimbo, but a clear similarity in species composition (CC = 0.80) and abundance (PS = 0.72) can be observed between forest sites. This suggest that lowland natural forest habitats of Mt. Malasimbo and Mt. Siburan are hotspots of myxomycete diversity. This research represents the most comprehensive survey of myxomycetes in Mindoro Island.
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