In mammals, nitric oxide synthases (NOSs) produce nitric oxide for signaling and defense functions; in Streptomyces, NOS proteins nitrate a tryptophanyl moiety in synthesis of a phytotoxin. We have discovered that the NOS protein from the radiation-resistant bacterium Deinococcus radiodurans (deiNOS) associates with an unusual tryptophanyl tRNA synthetase (TrpRS). D. radiodurans contains genes for two TrpRSs: the first has Ϸ40% sequence identity to typical TrpRSs, whereas the second, identified as the NOS-interacting protein (TrpRS II), has only Ϸ29% identity. TrpRS II is induced after radiation damage and contains an N-terminal extension similar to those of proteins involved in stress responses. N itric oxide synthases (NOSs) are highly regulated enzymes that synthesize the potent cytotoxin and signal molecule nitric oxide (NO) from L-arginine (L-arg) (1-3). In mammals, NOSs are responsible for many functions that range from protection against pathogens and tumor cells to blood pressure regulation and nerve transmission. Bacterial NOS proteins also catalyze the hemedependent conversion of L-arg to NO in vitro (4-7); however, in at least one case, they have been shown to function in the nitration of secondary metabolites (8). Mammalian NOSs are homodimers that contain an N-terminal heme oxygenase domain and a C-terminal flavoprotein reductase domain. The catalytic oxygenase domain binds L-arg, heme and the redox-active cofactor 6R-tetrahydrobiopterin, whereas the electron-supplying reductase domain binds FAD, FMN, and NADPH.Bacterial NOSs from Deinococcus radiodurans (deiNOS), Staphylococcus aureus (saNOS), and Bacillus subtilis (bsNOS) are homologous to the mammalian N-terminal heme oxygenase domain but lack an associated C-terminal flavoprotein reductase domain and N-terminal regions that bind Zn 2ϩ , the dihydroxypropyl side chain of 6R-tetrahydrobiopterin, and the adjacent subunit of the dimer (4, 6, 9). Nevertheless, deiNOS, bsNOS, and saNOS are dimeric, have a normal heme environment, bind substrate L-arg, and produce nitrogen oxide species in a manner dependent on pterin (either with 6R-tetrahydrobiopterin or with the related cofactor tetrahydrofolate (4, 5, 7). Conservation of key residues among bacterial and mammalian NOSs also suggests that all bacterial NOSs produce nitrogen oxides from L-arg and the NOS intermediate N -hydroxy-L-arginine (NHA) (6, 9). bsNOS has been directly shown to produce nitric oxide (5).The first biological function for a bacterial NOS was determined for Streptomyces (8). Pathogenic Streptomyces species (Streptomyces scabies, Streptomyces acidiscabies, Streptomyces turgidiscabies, and Streptomyces ipomoea) produce a family of unusual nitrated cyclic dipeptides [derivatives of cyclo-(L-tryptophanyl-L-phenylalanyl)], called thaxtomins (10), that contain a 4-nitro-tryptophanyl moiety and interfere with the formation of plant cell walls (11). A large pathogenicity island that contains the nonribosomal peptide synthase genes responsible for production of the thaxtomin dipeptide also ...