APH-1 and PEN-2 genes modulate the function of nicastrin and the presenilins in Caenorhabditis elegans.Preliminary studies in transfected mammalian cells overexpressing tagged APH-1 proteins suggest that this genetic interaction is mediated by a direct physical interaction. Using the APH-1 protein encoded on human chromosome 1 (APH-1 1 L; also known as APH-1a) as an archetype, we report here that endogenous forms of APH-1 are predominantly expressed in intracellular membrane compartments, including the endoplasmic reticulum and cis-Golgi. APH-1 proteins directly interact with immature and mature forms of the presenilins and nicastrin within high molecular weight complexes that display ␥-and ⑀-secretase activity. Indeed APH-1 proteins can bind to the nicastrin ⌬312-369 loss of function mutant, which does not undergo glycosylation maturation and is not trafficking beyond the endoplasmic reticulum. The levels of expression of endogenous APH-1 1 L can be suppressed by overexpression of any other members of the APH-1 family, suggesting that their abundance is coordinately regulated. Finally, although the absence of APH-1 destabilizes the presenilins, in contrast to nicastrin and PEN-2, APH-1 itself is only modestly destabilized in cells lacking functional expression of presenilin 1 or presenilin 2. Taken together, our data suggest that APH-1 proteins, and APH-1 1 in particular, may have a role in the initial assembly and maturation of presenilin⅐nicastrin complexes.Presenilin 1 (PS1) 1 (1), presenilin 2 (PS2) (2), and nicastrin (3) are components of high molecular weight protein complexes that are required for the intramembranous proteolysis of some type 1 transmembrane proteins, including the -amyloid precursor protein (APP) (4), Notch (5-11), and ErbB-4 (12). Genetic screens in Caenorhabditis elegans have identified two additional proteins, APH-1 (13) and PEN-2 (14), in which loss of function mutations phenotypically modulate Notch signaling in a manner similar to that of null mutants in nicastrin and the presenilins. Preliminary studies in transfected cells overexpressing tagged APH-1 proteins suggest that the genetic interaction between APH-1 and the presenilin-dependent cleavage of Notch and APP is mediated by a direct physical interaction between APH-1 and nicastrin or the presenilins (14). We report here that both the APH-1 homologue on human chromosome 1 (termed APH-1 a in Ref. 14, but here referred to as APH-1 1 for clarity to avoid confusion with labeling of alternate splice forms) and the APH-1 homologue on chromosome 15 (previously referred to as APH-1 b ; here termed APH-1 15 ) are widely expressed in multiple tissues and that the APH-1 1 transcript is present as several different alternatively spliced forms (data not shown). We also report that endogenous APH-1 1 directly interacts with both immature and mature forms of the presenilins and nicastrin and that high molecular weight complexes containing these proteins display ␥-and ⑀-secretase activity. Overexpression of any one member of the APH-1 family...