Morphological and functional comparison of convergently-evolved traits in marsupials and eutherians is an important aspect of studying adaptive divergence in mammals. However, the anatomy of marsupials has been particularly difficult to evaluate for multiple reasons. First, previous studies on marsupial anatomy are often uniformly old and non-exhaustive. Second, muscle identification was historically based on muscle attachment sites, but attachment sites have since been declared insufficient for muscle identification due to extensive interspecific variation. For example, different names have been used for muscles that are now thought to be equivalent among several different species, which causes confusion. Therefore, descriptions of marsupial muscles have been inconsistent among previous studies, and their anatomical knowledge itself needs updating. In this study, the koala was selected as the representative marsupial, in part because koala locomotion may comprise primate (eutherian)-like and marsupial-like mechanics, making it an interesting phylogenetic group for studying adaptive divergence in mammals. Gross dissection of the lower limb muscles (the gluteal and the posterior thigh regions) was performed to permit precise muscle identification. We first resolved discrepancies among previous studies by identifying muscles according to their innervation; this recent, more reliable technique is based on the ontogenetic origin of the muscle, and it allows for comparison with other taxa (i.e., eutherians). We compared our findings with those of other marsupials and arboreal primates and identified traits common to both arboreal primates and marsupials as well as muscle morphological features unique to koalas.