Mammalian lipoxygenases (LOXs) are categorized with respect to their positional specificity of arachidonic acid oxygenation. Sitedirected mutagenesis identified sequence determinants for the positional specificity of these enzymes, and a critical amino acid for the stereoselectivity was recently discovered. To search for sequence determinants of murine (12R
Lipoxygenases (LOXs)2 form a heterogeneous family of lipid peroxidizing enzymes that catalyze dioxygenation of free and/or esterified polyunsaturated fatty acids to their corresponding hydroperoxy derivatives (1). They are involved in the biosynthesis of eicosanoids (2) such as the pro-inflammatory leukotrienes (3) and anti-inflammatory lipoxins (4), but have also been implicated in cell maturation (5), cancer (6), psoriasis (7), atherogenesis (8), and osteoporosis (9).Mechanistically, the LOX reaction consists of four elementary reactions, the stereochemistry of which is tightly controlled (see Scheme 1): (i) stereoselective hydrogen abstraction from a bisallylic methylene, forming a carbon-centered fatty acid radical; (ii) [ϩ2] or [Ϫ2] rearrangement of the fatty acid radical; (iii) stereospecific insertion of molecular dioxygen, forming an oxygen-centered hydroperoxy radical; and (iv) reduction of the hydroperoxy fatty acid radical to the corresponding anion. Our current understanding of how mammalian LOXs control the stereochemistry of the oxygenation reaction is derived from the x-ray structure of rabbit reticulocyte 15-LOX (10), from extensive mutagenesis studies on various LOX isoforms (11-15), and from experiments with chemically modified fatty acid substrates (16,17). The substrate-binding cleft of the rabbit enzyme is a U-shaped pocket, the bottom of which is defined by a triad of amino acids (Phe 353 , Ile 418 , and Ile 593 ). A simple model for substrate alignment at the active site of this enzyme suggests that polyenoic fatty acids may slide into the substratebinding pocket with their methyl end ahead (12). Molecular modeling (10, 18) and site-directed mutagenesis (12) suggest that the volume of the active site might be important for the positional specificity. This space-related hypothesis was initially opposed by the orientation-based model, which suggests the possibility of an inverse head-to-tail substrate alignment (19,20). However, more recent experimental data suggest that both hypotheses appear to be valid (12,17).Most of the mechanistic studies performed out in the past on the structural basis for the positional specificity of LOXs have been carried out on classical S-LOX isoforms (see Ref. 12 for review), but little is known about the corresponding mechanisms of the more recently discovered R-lipoxygenating enzyme species (21-23). However, during the preparation of this manuscript, a study that also included two R-LOXs was published (24). Multiple amino acid sequence alignments of R-and S-LOXs suggest that the R-lipoxygenating enzymes contain a conserved Gly in the central part of their primary structure. Mutation of Gly 427 to Ala in (...