This paper discusses robust seeking control of hard disk drives by the use of a variable structure multirate estimator (VSME). Compensation of pivot nonlinearity is one concern in the design of the seeking control, systems. Pivot nonlinearity is subject to uncertainties, and is difficult to deal with by a linear controller. The VSME estimates a class of uncertain disturbances and nonlinearities and yields compensation current through the linear feedback gain, which reduces the residual vibration and error during settling. Several experiments were carried out on several drives including a 3.5 in. 7,200 rpm drive. These experiments confirmed that the off-track probability after settling, which is defined by the number of seek failures over all trials, is much reduced to less than 1% when the drive is operated under a special temperature condition that increases pivot nonlinearity while the corresponding performance of a conventional linear controller is 12%. The seek failure is defined as the case when the position cannot be maintained within ±2.5% of a track pitch for a certain duration after track seeking mode.