Multiplex amplified product-length polymorphism analysis of 36 mitochondrial single-nucleotide polymorphisms for haplogrouping of East Asian populations

Umetsu, Kazuo; Tanaka, Masashi; Yuasa, Isao; Adachi, Noboru; Miyoshi, Akio; Kashimura, S.; Park, Kyung Sook; Wei, Yau‐Huei; Watanabe, Gotaro; Osawa, Motoki

doi:10.1002/elps.200406129

Cited by 75 publications

(88 citation statements)

References 20 publications

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“…However, the basic concept of the 'dual' structure model for Japanese population history (Hanihara, 1991) or of the 'double' strata (Yamaguchi, 1986) has been sufficiently valid in other regions of the Japanese archipelago, and remains so (Saitou, 2005), because Yamaguchi (1986) and Hanihara (1991) presented the 'double migration' story as the simplest model for the population history of Japan. Moreover, there may be no sense in arguing for and against the 'Ainu-Ryukyu common origin theory', because the modern peoples in the Japanese archipelago, including the modern Japanese, should more or less have traces of the Jomon, as indicated by mtDNA analysis (Umetsu et al, 2005).…”

Section: Discussionmentioning

confidence: 99%

Nonmetric cranial variation of early modern human skeletal remains from Kumejima, Okinawa and the peopling of the Ryukyu Islands

Fukumine

Hanihara

Nishime³

et al. 2006

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Nonmetric cranial variation of the Ryukyuans, including the Kumejima population, and their neighboring peoples was investigated. Among the populations compared, incidences of supernumerary ossicles in the Ryukyu series were high. The frequency of the supraorbital foramen of the Kumejima series was shown to be intermediate between those of the East Asians and Ainu. Mean measures of divergence (MMDs) based on 16 nonmetric traits showed that Kumejima is closest to Okinawa, Sakishima, and Amami, as well as to the Philippine and Yayoi groups. The four Ryukyu groups were the most distant from the Hawaii population. Multidimensional scaling and neighbor-joining methods were applied to the distance matrix to represent the relationships among populations. The four Ryukyu groups grouped together with the Yayoi to form a cluster, which was positioned between the East and Southeast Asians and the Jomon-Ainu populations. This suggests that there were not only northern, but also southern influences on the Ryukyu Islands during prehistoric and historic times, as suggested by recent genetic studies.

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Section: Discussionmentioning

confidence: 99%

Nonmetric cranial variation of early modern human skeletal remains from Kumejima, Okinawa and the peopling of the Ryukyu Islands

Fukumine

Hanihara

Nishime³

et al. 2006

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“…Moreover, M7a is one of the prevailing haplogroups not only among modern Japanese, including Honshu, Okinawa islanders, and Ainu populations (Tanaka et al 2004), but also in the Jomon population (Adachi et al 2011). The frequency of haplogroup M7a among modern Japanese is highest in the Okinawa islanders (23.3 per cent; Umetsu et al 2005) -gradually decreasing towards the northern part of Honshu (Shinoda 2007). This finding indicates that this haplogroup may have a southern origin.…”

Section: Resultsmentioning

confidence: 99%

“…To confidently assign mtDNA samples to relevant haplogroups, 24 haplogroup-diagnostic single nucleotide polymorphisms (SNPs), including a 9 bp repeat variation in the non-coding cytochrome oxidase II/tRNALys intergenic region, that defines major haplogroups found in Japanese and East Asian populations, were analysed by multiplex APLP (Umetsu et al 2005). SNPs that defined major haplogroups were detected by using suspension array technology (Luminex 100) at the laboratory of G&G Science, Fukushima.…”

Section: Terra Australis 45mentioning

confidence: 99%

Ancient DNA Analysis of Palaeolithic Ryukyu Islanders

Shinoda¹,

Adachi²

2017

New Perspectives in Southeast Asian and Pacific Prehistory

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Section: Resultsmentioning

confidence: 99%

“…Sequencing was performed in both directions to enable identification of polymorphisms or ambiguous bases by using a single primer. The sequencing reactions were performed on a DNA Sequencer (ABI model 3130) equipped with SeqEd software (ABI).To confidently assign mtDNA samples to relevant haplogroups, 24 haplogroup-diagnostic single nucleotide polymorphisms (SNPs), including a 9 bp repeat variation in the non-coding cytochrome oxidase II/tRNALys intergenic region, that defines major haplogroups found in Japanese and East Asian populations, were analysed by multiplex APLP (Umetsu et al 2005). SNPs that defined major haplogroups were detected by using suspension array technology (Luminex 100) at the laboratory of G&G Science, Fukushima.…”

mentioning

confidence: 99%

New Perspectives in Southeast Asian and Pacific Prehistory

Pawley¹

2017

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terra australis 45Terra Australis reports the results of archaeological and related research within the south and east of Asia, though mainly Australia, New Guinea and island Melanesia -lands that remained terra australis incognita to generations of prehistorians. Its subject is the settlement of the diverse environments in this isolated quarter of the globe by peoples who have maintained their discrete and traditional ways of life into the recent recorded or remembered past and at times into the observable present. Copyright of the text remains with the authors, 2017. This book is copyright in all countries subscribing to the Berne convention. Apart from any fair dealing for the purpose of private study, research, criticism or review, as permitted under the Copyright Act, no part may be reproduced by any process without written permission. Inquiries should be made to the publisher. List of volumes in Terra Australis Karina ArifinFakultas Ilmu Pengetahuan Budaya, Departemen Arkeologi, Universitas Indonesia, Depok, Indonesia Robert BlustDepartment of Linguistics, University of Hawai'i, Honolulu, USA David BulbeckDepartment of Archaeology and Natural History, College of Asia and the Pacific, The Australian National University, Canberra, Australia Judith CameronDepartment of Archaeology and Natural History, College of Asia and the Pacific, The Australian National University, Canberra, Australia Zhang ChiSchool of Archaeology and Museology, Peking University, Beijing, China Gang HeThe Cultural Relics and Archeological Research Institution in Hunan Province, China Helen HeathDepartment of Anthropology and Archaeology, University of Otago, North Dunedin, New Zealand Charles HighamDepartment of Anthropology and Archaeology, University of Otago, North Dunedin, New Zealand Mark J. HudsonMt Fuji World Heritage Centre for Mountain Research, Shizuoka, Japan Museum of Natural and Environmental History, Shizuoka, Japan Hsiao-chun HungDepartment of Archaeology and Natural History, College of Asia and the Pacific, The Australian National University, Canberra, Australia Michiko IntohDepartment of Social Research, National Museum of Ethnology, Osaka, Japan Timothy A. JinamDivision of Population Genetics, National Institute of Genetics, Shizuoka, Japan Hideaki Kanzawa-KiriyamaDepartment of Anthropology, National Museum of Nature and Science, Tokyo, Japan Nguyen Kim DungThe Vietnamese Institute of Archaeology, Hanoi, Vietnam Nguyen Lan CuongThe Vietnamese Institute of Archaeology, Hanoi, Vietnam Tracey L.-D. LuDepartment of Anthropology, the Chinese University of Hong Kong, Hong Kong, China Hirofumi MatsumuraFaculty of Health Science, Sapporo Medical University, Sapporo, Japan Armand Salvador MijaresArchaeological Studies Program, University of the Philippines, Quezon City, Philippines Carmen SarjeantSchool of Archaeology and Anthropology, College of Arts and Social Sciences, The Australian National University, Canberra, Australia Ken-ichi ShinodaDepartment of Anthropology, National Museum of Nature and Science, Tsukuba, Japan Tr...

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Multiplex amplified product-length polymorphism analysis of 36 mitochondrial single-nucleotide polymorphisms for haplogrouping of East Asian populations

Cited by 75 publications

References 20 publications

Nonmetric cranial variation of early modern human skeletal remains from Kumejima, Okinawa and the peopling of the Ryukyu Islands

Nonmetric cranial variation of early modern human skeletal remains from Kumejima, Okinawa and the peopling of the Ryukyu Islands

Ancient DNA Analysis of Palaeolithic Ryukyu Islanders

New Perspectives in Southeast Asian and Pacific Prehistory

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