The angular distributions of protons travelling through thin polycrystalline gold targets (~15 nm) with incident energies in the range of 4-10 keV have been measured. The results confirm previous experiments at higher energies showing deviations from theoretical predictions based on the standard multiple scattering theory. In order to prove that the effect of crystal structure is one of the main causes of these deviations we have performed numerical simulations. To simulate the polycrystalline structure in a realistic way, we have made an analysis of the target by means of transmission electron microscopy (TEM) techniques. Including these characteristics in the simulation, together with the effect of vibrations and crystal disorder we analyzed the corresponding angular distribution. To evaluate the role of channeling, we also measured angular distributions of protons in a 〈100〉 gold foil and made the corresponding numerical simulations. The results show the critical influence of the target structure in the angular spectra of transmitted ions.