Quantum phases of interlayer excitons (IXs) in van der Waals heterostructures (vdWHs) play a critical rule in determining the fundamental properties of these structures. However, quantum phase transitions between free state and self‐trapped state of IXs remain poorly understood. Here, we explore the physical pictures for quantum transitions of IXs stemming from the IX‐interface optical phonon coupling. We give the critical boundaries of the phase transitions among free, light and heavy self‐trapped states and discuss the dependence of boundaries on the structural parameters of vdWHs, implying the controllability of these IXs states in vdWHs. In order to distinguish different quantum phases further, we propose a strategy that multiphonon Raman scattering mediated by these exciton states. We find that multiphonon overtones appear in Raman spectra for the self‐trapped states and not for free states, which clarifies the long‐standing puzzle that free exciton could induce multiphonon Raman processes. Our results lay the significant theoretical foundation for understanding the quantum phases of IX and their modulation in vdWHs.This article is protected by copyright. All rights reserved.