“…These Encyclopedia of DNA Elements (ENCODE) projects focused largely on human, C. elegans , D. melanogaster and mouse ( ENCODE Project Consortium, 2012 ; Celniker et al, 2009 ; ENCODE Project Consortium et al, 2020 ). DANIO-CODE is an inspiring bottom-up community effort of more than 30 laboratories that has integrated published and unpublished zebrafish epigenomic data ( Baranasic et al, 2022 ; Lawson, 2022 ). An integrated analysis of more than 1800 remapped data sets from 15 distinct developmental stages using chromatin immunoprecipitation with sequencing (ChIP-seq; Robertson et al, 2007 ), assay for transposase-accessible chromatin with sequencing (ATAC-seq; Buenrostro et al, 2013 ), RNA sequencing ( Emrich et al, 2006 ), cap analysis gene expression (CAGE; Shiraki et al, 2003 ), high-throughput chromosome conformation capture (Hi-C; Lieberman-Aiden et al, 2009 ) and circularized chromosome conformation capture sequencing (4C-seq; Zhao et al, 2006 ) yielded over 140,000 predicted regulatory elements associated with development and organogenesis.…”