For the past few
years, multidimensional liquid chromatography-mass
spectrometry (LC-MS) systems have been commonly used to characterize
post-translational modifications (PTMs) of therapeutic antibodies
(mAbs). In most cases, this is performed by fractionation of charge
variants by ion-exchange chromatography and subsequent online LC-MS
peptide mapping analysis. In this study, we developed a multidimensional
ultra-performance-liquid-chromatography-mass spectrometry system (mD-UPLC-MS/MS)
for PTM characterization and quantification, allowing both rapid analysis
and decreased risk of artificial modifications during sample preparation.
We implemented UPLC columns for peptide mapping analysis, facilitating
the linkage between mD-LC and routine LC-MS workflows. Furthermore,
the introduced system incorporates a novel in-parallel trypsin and
LysC on-column digestion setup, followed by a combined peptide mapping
analysis. This parallel digestion with different enzymes enhances
characterization by generating two distinct peptides. Using this approach,
a low retentive ethylene oxide adduct of a bispecific antibody was
successfully characterized within this study. In summary, our approach
allows versatile and rapid analysis of PTMs, enabling efficient characterization
of therapeutic molecules.