Mucin-type O-glycans are classified according to their core structures. Among them, cores 2 and 4 are important for having N-acetyllactosamine side chains, which can be further modified to express various functional oligosaccharides. Previously, we discovered by cloning cDNAs that the core 2 branching enzyme, termed core 2 -1,6-N-acetylglucosaminyltransferase-leukocyte type (C2GnT-L), is highly homologous to the I branching -1,6-N-acetylglucosaminyltransferase (IGnT) (Bierhuizen, M. F. A., Mattei, M.-G., and Fukuda, M. (1993) Genes Dev. 7, 468 -478). Using these homologous sequences as probes, we identified an expressed sequence tag in dbEST, which has significant homology to C2GnT-L and IGnT. This approach, together with 5and 3 rapid amplification of cDNA ends, yielded a human cDNA that encompasses a whole coding region of an enzyme, termed C2GnT-mucin type (C2GnT-M). C2GnT-M has 48.2 and 33.8% identity with C2GnT-L and IGnT at the amino acid levels. The expression of C2GnT-M cDNA directed the expression of core 2 branched oligosaccharides and I antigen on the cell surface. Moreover, a soluble chimeric C2GnT-M had core 4 branching activity in addition to core 2 and I branching activities. A soluble chimeric C2GnT-L, in contrast, almost exclusively contains core 2 branching activity. Northern blot analysis demonstrated that the C2GnT-M transcripts are heavily expressed in colon, small intestine, trachea, and stomach, where mucin is produced. In contrast, the transcripts of C2GnT-L were more widely detected, including the lymph node and bone marrow. These results indicate that the newly cloned C2GnT-M plays a critical role in O-glycan synthesis in mucins and might have distinctly different roles in oligosaccharide ligand formation compared with C2GnT-L.Mucin-type glycoproteins are unique in having clusters of large numbers of O-glycans. These O-glycans contain N-acetylgalactosamine residues at reducing ends, which are linked to serine or threonine in a polypeptide (1). These attached O-glycans can be classified into several different groups according to the core structures (2). In many cells, core 1, Gal133GalNAc, is the major constituent of O-glycans. Core 1 oligosaccharides are converted to core 2 oligosaccharides Gal133(GlcNAc136)GalNAc when core 2 -1,6-N-acetylglucosaminyltransferase (C2GnT) 1 is present (3, 4). Various ligand carbohydrates can be formed in core 2 branched oligosaccharides. For example, sialyl Le x in mucin-type glycoproteins of blood cells can be formed only in core 2 branched oligosaccharides such as NeuNAc␣233Gal134(Fuc␣133) GlcNAc136(NeuNAc␣233Gal133)GalNAc␣3serine/ threonine (3, 5-7).Those sialyl Le x and sulfated sialyl Le x in O-glycans have been shown to be preferential ligands for P-and L-selectin (6 -10). It has been also shown that poly-N-acetyllactosamines can be extended from core 2 branches (3,5,7,11,12). Poly-Nacetyllactosamines provide the backbone for additional modifications such as sialyl Le x . Moreover, a linear poly-N-acetyllactosamine (Gal134GlcNAc133) n can ...