Advances in laboratory methods and DNA sequencing technology have enabled genetic analyses of noninvasive samples, museum specimens, fossil material, and more recently, carcasses. We extracted DNA from decayed avian carcasses that were salvaged from a marine environment in southern Texas, USA, during 2010-2014, at 2 weeks to 3 months postmortem. Extracts of DNA from toepad, bone, and feather yielded usable DNA for molecular sexing and amplification of a 223-base pair portion of the mtDNA control region. Most samples displayed signs of degradation, including small fragment sizes and heteroplasmy in mtDNA sequences consistent with deamination during the decay process. The ability to extract usable DNA from avian carcasses salvaged in a marine environment has implications for the ecology and management of waterbirds, many of which are rare, sexually monomorphic, and poorly understood.