Human endogenous retroviruses (HERVs) account for up to 9% of the human genome and include more than 800 elements related to betaretroviruses. While mouse mammary tumor virus (MMTV) is the accepted etiological agent of mammary tumors in mice, the role of retroviral elements in human breast cancer remains elusive. Here, we performed a comprehensive microarray-based analysis of overall retroviral transcriptional activities in 46 mammary gland tissue specimens representing pairs of nonmalignant and tumor samples from 23 patients. An analysis of nonmalignant tissue samples revealed a distinct, mammary gland-specific HERV expression profile that consists of 18 constitutively active HERV taxa. For corresponding tumor samples, a general trend toward lower levels of HERV transcription was observed, suggesting common regulatory mechanisms. In various subsets of patients, however, increased transcript levels of single class I HERV families (HERV-T, HERV-E, and HERV-F) and several class II families, including HML-6, were detected. An analysis of transcribed HML-6 sequences revealed either the activation of some or the increased activity of several proviral loci. No evidence for MMTV or human MMTV-like virus transcripts was found, indicating that transcriptionally active, MMTV analogous, exogenous viruses were not present in the breast cancer samples analyzed.Great efforts have been invested in searching for the etiology of human breast cancer, a malignancy accounting for one-fifth of all female cancers worldwide. Although many studies have identified several risk factors, such as age, diet, hormonal balance, and genetic predisposition, a clear underlying cause for the disease, especially for sporadic cases of breast cancer, remains unknown. The current data suggest that breast cancer most likely is a multifactorial disease encompassing many different causes and factors (2, 30). Moreover, it has been suggested that an infectious agent contributes to the development of human breast cancer (16,45). Of note, a novel human retrovirus (xenotropic murine leukemia virus) has recently been associated with human prostate cancer (7, 48).Since type B mouse mammary tumor virus (MMTV) is the major etiological agent of mammary gland neoplasia in laboratory mice, researchers have searched extensively for a related human retrovirus that could be responsible for human breast cancer. The existence of such a virus, although postulated for many years, has not been conclusively demonstrated, although a long line of indirect evidence for it exists. This evidence is reflected by reports on the expression of type B envelope glycoprotein (gp52) (32) and the occurrence of virus-like particles in breast cancer biopsy specimens (8), in milk (38), and in cultures of breast cancer-derived cell lines (20, 40) as well as the detection of antibodies directed against gp52 in breast cancer patients (52). However, supporting observations have been confounded by a failure to continually observe virus particles in human tumors and by numerous controversial repo...