The low potential iron-sulfur (Fe-S) electron carriers known as ferredoxins (Fds) 1 are found in three distinct classes, the (7), and Aquifex aeolicus (8). The high level of similarity of these proteins allows for easy transfer of structural information among them. For instance, many properties of molecular variants of the C. pasteurianum [2Fe-2S] Fd (6, 9, 10) could be rationalized from the crystal structure of A. aeolicus Fd4 (11). This structure established the unexpected thioredoxin-like fold of these Fds and confirmed that they are distinct from the other two ferredoxin classes (1). The 2.3 Å resolution of the Fd4 structure, however, was not among the highest currently reported (about 1 Å) for metalloenzymes. Indeed, such high resolution structures are of utmost interest because they bring forth precise geometries of metal sites (4) and may allow description of redox transitions (5). Additional efforts have therefore been made, both on wild type (WT) thioredoxin-like Fds and on several of the molecular variants that were produced over the years (6,10,12), with the aim of improving the crystallographic data.In some modified forms of C. pasteurianum Fd, cysteine ligands of the Fe-S cluster were replaced by serine (9, 13). In their reduced ϩ level, these serine-ligated active sites were found to assume a delocalized mixed valence state having a ground spin state of 9/2 (14, 15). This unprecedented occurrence in binuclear iron-sulfur clusters has stimulated experimental and theoretical work (16,17). The development of these investigations has been hampered, however, by the absence of structural data on serine-ligated [2Fe-2S] active sites and their environment. Because only the Fd4 from A. aeolicus has been crystallized, we have repeated amino acid substitutions in that protein previously performed on C. pasteurianum Fd and produced the C55S and C59S variants that contain serine-ligated [2Fe-2S] clusters. We report here the high resolution structures for both of these variants as well as WT protein which provide accurate metric details for serine-ligated Fe-S clusters in proteins.
EXPERIMENTAL PROCEDURESProtein Samples-Fd4 from A. aeolicus was purified as described by Chatelet et al. (8). The C55S and C59S variants were prepared by site-directed mutagenesis as described for the C56S and C60S counterparts from C. pasteurianum (13). The mutagenic oligonucleotides were