2016
DOI: 10.1111/cla.12143
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Morphology disentangles the systematics of a ubiquitous but elusive meiofaunal group (Kinorhyncha: Pycnophyidae)

Abstract: Kinorhyncha is a group of benthic, microscopic animals distributed worldwide in marine sediments. The phylum is divided into two classes, Cyclorhagida and Allomalorhagida, congruent with the two major clades recovered in recent phylogenetic analyses. Allomalorhagida accommodates more than one-third of the described species, most of them assigned to the family Pycnophyidae. All previous phylogenetic analyses of the phylum recovered the two genera within Pycnophyidae, Pycnophyes and Kinorhynchus, as paraphyletic… Show more

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Cited by 40 publications
(34 citation statements)
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References 76 publications
(154 reference statements)
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“…To investigate the effect of different analytical parameters on the tree topologies (Wheeler, ), timed searches were run using six independent analytical parameter sets named 111, 121, 211, 221, 3211 and 3221 (Boyer et al., ; Martínez et al., ; Sánchez et al., ). To ensure the recovery of all optimal trees, each search started with multiple Wagner trees, which were optimized with subtree pruning and regrafting (SPR) and tree bisection and reconnection (TBR) algorithms, followed by several rounds of ratcheting and tree fusing.…”
Section: Methodsmentioning
confidence: 99%
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“…To investigate the effect of different analytical parameters on the tree topologies (Wheeler, ), timed searches were run using six independent analytical parameter sets named 111, 121, 211, 221, 3211 and 3221 (Boyer et al., ; Martínez et al., ; Sánchez et al., ). To ensure the recovery of all optimal trees, each search started with multiple Wagner trees, which were optimized with subtree pruning and regrafting (SPR) and tree bisection and reconnection (TBR) algorithms, followed by several rounds of ratcheting and tree fusing.…”
Section: Methodsmentioning
confidence: 99%
“…The tree topology corresponding to parameter set 3221 was chosen to summarize the results as this parameter set has been philosophically justified (De Laet, ). This parameter set (3221) includes the ability to use non‐linear indel costs, where indel opening and indel extension receive different values (3 vs. 1), favouring longer indel events (a more realistic assumption for ribosomal genes) versus many single events, therefore maximizing the congruence between partitions (Martínez et al., ; Sánchez et al., ).…”
Section: Methodsmentioning
confidence: 99%
“…The characteristic features of Pycnophyes alexandroi sp. nov. do not fit with the diagnostic characters of none of the newly pycnopyid genera erected by Sánchez et al (2016).…”
Section: Pycnophyes Alexandroi Sp Novmentioning
confidence: 75%
“…nov. only appeared in Bocas del Toro at the sampling locality near the Station dock (BRS 008; see Table 2). For Pacific Panama, see Pardos et al 2016, this issue.…”
Section: Associated Kinorhynch Faunamentioning
confidence: 99%
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