A molecular‐thermodynamic analysis is directed toward predicting the partitioning of aqueous proteins into charged hydrogels. This analysis takes into account size exclusion by the network, electrostatic interactions, and the osmotic‐pressure difference between a hydrogel and its surrounding solution. Electrostatic interactions in the polyelectrolyte gel can be described by Debye – Hückel theory, or the Mean Spherical Approximation, or Katchalsky's cell model for polyelectrolyte solutions. The cell model gives best agreement with experimental partition coefficients for cytochrome c. The quasi‐electrostatic potential difference between a gel and its surrounding solution demonstrates how the electrostatic contribution to the protein partition coefficient depends on protein charge, gel‐charge density, and solution ionic strength. Finally, a qualitative guide is presented for design of a polyelectrolyte gel such that it exhibits specified swelling and partitioning properties.